Factsheet for Bra011847.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41990	Canola	plastid	95.88	98.94
CDY42639	Canola	plastid	94.65	95.24
AT4G39620.1	Thale cress	plastid	86.83	74.96
VIT_07s0031g01360.t01	Wine grape	plastid	65.23	64.83
PGSC0003DMT400033331	Potato	plastid	61.52	62.68
Solyc04g054270.2.1	Tomato	plastid	61.52	62.55
KRH59429	Soybean	plastid	64.4	62.23
KRH43291	Soybean	plastid	63.79	58.94
GSMUA_Achr5P22880_001	Banana	plastid	60.29	57.45
Zm00001d052240_P001	Maize	plastid	58.85	57.31
KXG30749	Sorghum	plastid	57.61	56.22
Os02t0750400-01	Rice	cytosol	22.63	51.89
TraesCS6D01G282900.1	Wheat	plastid	57.41	51.67
TraesCS6A01G303300.1	Wheat	plastid	57.41	51.67
TraesCS6B01G332800.1	Wheat	plastid	57.2	49.12
HORVU6Hr1G075250.5	Barley	plastid	50.21	48.8
Bra020748.1-P	Field mustard	plastid	22.02	21.79
Bra037464.1-P	Field mustard	plastid	23.25	21.12
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	21.19	20.64
Bra035352.1-P	Field mustard	mitochondrion	17.7	17.84
Bra019526.1-P	Field mustard	cytosol	7.82	14.39
Bra017881.1-P	Field mustard	plastid	18.31	12.71
Bra024454.1-P	Field mustard	plastid	20.37	12.12
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	18.11	11.58
Bra035290.1-P	Field mustard	plastid	18.31	11.12
Bra015889.1-P	Field mustard	plastid	19.14	10.76
Bra004642.1-P	Field mustard	cytosol, plastid	18.11	10.76
Bra018246.1-P	Field mustard	plastid	10.91	10.73
Bra021733.1-P	Field mustard	cytosol	16.87	7.47
Bra018247.1-P	Field mustard	nucleus	3.09	4.95

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra011847	EnsemblPlants:Bra011847.1	EnsemblPlants:Bra011847.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007275	GO:GO:0008150	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4D5U0	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF490	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002546059	SEG:seg	:	:	:

Description

AT4G39620 (E=6e-186) EMB2453 | EMB2453 (embryo defective 2453)

Coordinates

chrA01:+:247442..249732

Molecular Weight (calculated)

56110.3 Da

IEP (calculated)

9.214

GRAVY (calculated)

-0.352

Length

486 amino acids

Sequence
(BLAST)

001: MAVDYLLTSP STLRFSDFIS SFSPNTNHKC LRFSPKPSSA RITCGAISSK RKLAEREIAE RENRVLVRNL MSRISDREPL VKNLDKYVKV VRCEHCFLLF
101: EELGKSDKWL PCLEGFFFTS SSNEFECLEV FRWMQKQRWY IADNGVYSKL ISVMGKKGQT RMAMWLFSEM KNSGCRPDAS VYNALITAHL HTRDKAKALE
201: KVLGYFDKMK GMERCQPNVV TYNILLRAFA QSGKVDQVNA LFKDLDMSAV SPDVYTFNGV MDAYGKKGMI KEMESVLTRM RSNECKPDII TFNLLIDSYG
301: KKQEFEKMEQ TFKSLMRSKE KPTLPTFNSM IINYGKARLR DKAEWVFEKM NDMNYPPSFI TYECMIMMYG YCGCVSRARE VFEEVVESER VLKASTLNAM
401: LEVYCLNGLH MEADKLFHNA SGFRVHPDAS TYKLLYKAYT KADMKENVQM LMKKMEKDGI VPNKRFFLEA LEAFGSRLPG SDSAMR

Best Arabidopsis Sequence Match ( AT4G39620.1 )
(BLAST)

001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL

Arabidopsis Description

EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.