Factsheet for Bra018246.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10802	Canola	plastid	94.94	55.24
AT2G31400.1	Thale cress	plastid	76.32	41.07
HORVU5Hr1G022350.1	Barley	plastid	40.89	39.3
VIT_07s0005g01660.t01	Wine grape	plastid	63.97	36.45
PGSC0003DMT400018827	Potato	cytosol	49.6	32.41
Solyc06g009520.2.1	Tomato	nucleus, plastid	54.86	32.22
Bra021733.1-P	Field mustard	cytosol	64.57	29.05
KRH45156	Soybean	plastid	44.13	24.83
KRH01436	Soybean	plastid	43.72	24.69
GSMUA_Achr2P02090_001	Banana	cytosol	32.19	24.46
TraesCS5D01G097800.1	Wheat	plastid	42.11	24.3
TraesCS5A01G085800.1	Wheat	plastid	41.9	24.13
TraesCS5B01G091600.1	Wheat	plastid	41.7	24.01
EES16159	Sorghum	plastid	40.49	22.94
Zm00001d030624_P001	Maize	plastid	40.28	22.87
Bra019526.1-P	Field mustard	cytosol	11.13	20.83
Bra035290.1-P	Field mustard	plastid	26.52	16.38
Bra024454.1-P	Field mustard	plastid	22.47	13.59
Bra004642.1-P	Field mustard	cytosol, plastid	22.06	13.33
Bra015889.1-P	Field mustard	plastid	23.08	13.19
Bra017881.1-P	Field mustard	plastid	17.81	12.57
Bra011847.1-P	Field mustard	plastid	10.73	10.91
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	10.32	10.22
Bra037464.1-P	Field mustard	plastid	10.93	10.09
Bra020748.1-P	Field mustard	plastid	9.72	9.78
Bra035352.1-P	Field mustard	mitochondrion	8.91	9.13
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	13.97	9.08
Bra018247.1-P	Field mustard	nucleus	1.21	1.98
Os12t0562300-01	Rice	cytosol	0.61	0.98

Protein Annotations

EnsemblPlants:Bra018246.1	EnsemblPlants:Bra018246.1-P	EnsemblPlantsGene:Bra018246	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF366	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI00025479B9	UniProt:M4DP06	MapMan:35.1	:	:

Description

AT2G31400 (E=2e-185) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA05:+:6913777..6915261

Molecular Weight (calculated)

54889.2 Da

IEP (calculated)

8.525

GRAVY (calculated)

-0.288

Length

494 amino acids

Sequence
(BLAST)

001: MASTPPHWSL FTATTSNHHQ TRQQPNHRQW LPPRVSSSPR GSRSLSAAPP SSPSPVSHRK LPTFSPLLTP NSSPPLSSDF SGRRSTRFVS KMHFNRPKTT
101: TSTRHSPAAE NALHSLTAFS GDNDETTFQS LISTFEPTLH SSDDYTFLLR ELGNRGECDK ALLLYHFAVQ RERRKNERGK LASAMIGTLG RLGKVSIAKT
201: VFESALSGGY GNTVYAFSAL ISAYGRSGLH NEAITVFDSM KSYGLRPNLV TYNAVIDACG KGGMEFSKVA EFFDEMERNG VQPDRITFNS LLGVCSRGGL
301: WEVARSLFHE MANRKIEQDV FSYNTLLDAV CKGGQMDLSF DVLAQMRENR ITPNVVSYST VIDGFAKAGR FDEALTLFDE IRYLGIALDR VSYNTLLSIY
401: TKVGRDEEAL DVLREMASVG IKKDVVTYNA LLGGYGKRGK YVEVESVFDE MKREGVLPNL LTYSTLIDVY SKAGLYREAM EVIGLYIEIE LHLV

Best Arabidopsis Sequence Match ( AT2G31400.1 )
(BLAST)

001: MASTPPHWVT TTNNHRPWLP QRPRPGRSVT SAPPSSSASV SSAHLSQTTP NFSPLQTPKS DFSGRQSTRF VSPATNNHRQ TRQNPNYNHR PYGASSSPRG
101: SAPPPSSVAT VAPAQLSQPP NFSPLQTPKS DLSSDFSGRR STRFVSKMHF GRQKTTMATR HSSAAEDALQ NAIDFSGDDE MFHSLMLSFE SKLCGSDDCT
201: YIIRELGNRN ECDKAVGFYE FAVKRERRKN EQGKLASAMI STLGRYGKVT IAKRIFETAF AGGYGNTVYA FSALISAYGR SGLHEEAISV FNSMKEYGLR
301: PNLVTYNAVI DACGKGGMEF KQVAKFFDEM QRNGVQPDRI TFNSLLAVCS RGGLWEAARN LFDEMTNRRI EQDVFSYNTL LDAICKGGQM DLAFEILAQM
401: PVKRIMPNVV SYSTVIDGFA KAGRFDEALN LFGEMRYLGI ALDRVSYNTL LSIYTKVGRS EEALDILREM ASVGIKKDVV TYNALLGGYG KQGKYDEVKK
501: VFTEMKREHV LPNLLTYSTL IDGYSKGGLY KEAMEIFREF KSAGLRADVV LYSALIDALC KNGLVGSAVS LIDEMTKEGI SPNVVTYNSI IDAFGRSATM
601: DRSADYSNGG SLPFSSSALS ALTETEGNRV IQLFGQLTTE SNNRTTKDCE EGMQELSCIL EVFRKMHQLE IKPNVVTFSA ILNACSRCNS FEDASMLLEE
701: LRLFDNKVYG VVHGLLMGQR ENVWLQAQSL FDKVNEMDGS TASAFYNALT DMLWHFGQKR GAELVALEGR SRQVWENVWS DSCLDLHLMS SGAARAMVHA
801: WLLNIRSIVY EGHELPKVLS ILTGWGKHSK VVGDGALRRA VEVLLRGMDA PFHLSKCNMG RFTSSGSVVA TWLRESATLK LLILHDHITT ATATTTTMKS
901: TDQQQRKQTS FALQPLLL

Arabidopsis Description

GUN1Pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.