Factsheet for Bra018247.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0562300-01	Rice	cytosol	51.16	50.65
CDY10802	Canola	plastid	93.73	33.45
AT2G31400.1	Thale cress	plastid	83.17	27.45
GSMUA_Achr2P02090_001	Banana	cytosol	53.14	24.77
PGSC0003DMT400018827	Potato	cytosol	61.72	24.74
VIT_07s0005g01660.t01	Wine grape	plastid	67.99	23.76
Bra021733.1-P	Field mustard	cytosol	83.83	23.13
Bra019526.1-P	Field mustard	cytosol	19.47	22.35
Solyc06g009520.2.1	Tomato	nucleus, plastid	61.72	22.24
KRH45156	Soybean	plastid	52.48	18.11
Zm00001d030624_P001	Maize	plastid	51.16	17.82
TraesCS5A01G085800.1	Wheat	plastid	50.16	17.72
KRH01436	Soybean	plastid	51.16	17.71
TraesCS5D01G097800.1	Wheat	plastid	49.51	17.52
TraesCS5B01G091600.1	Wheat	plastid	49.17	17.37
EES16159	Sorghum	plastid	49.84	17.32
Bra015889.1-P	Field mustard	plastid	17.49	6.13
Bra017881.1-P	Field mustard	plastid	10.89	4.71
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	7.26	4.41
Bra035290.1-P	Field mustard	plastid	11.22	4.25
Bra024454.1-P	Field mustard	plastid	10.89	4.04
Bra035352.1-P	Field mustard	mitochondrion	6.27	3.94
Bra037464.1-P	Field mustard	plastid	6.93	3.93
Bra004642.1-P	Field mustard	cytosol, plastid	10.56	3.91
Bra011847.1-P	Field mustard	plastid	4.95	3.09
Bra020748.1-P	Field mustard	plastid	4.95	3.05
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	6.27	2.5
Bra018246.1-P	Field mustard	plastid	1.98	1.21
HORVU5Hr1G022350.1	Barley	plastid	1.65	0.97

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.1370.110	MapMan:35.1	EnsemblPlantsGene:Bra018247	EnsemblPlants:Bra018247.1	EnsemblPlants:Bra018247.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
UniProt:M4DP07	PFAM:PF01713	PFAM:PF13812	PFscan:PS50828	PANTHER:PTHR24015	PANTHER:PTHR24015:SF366
InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00025479BA	:	:	:	:	:

Description

AT2G31400 (E=7e-139) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA05:+:6920538..6921672

Molecular Weight (calculated)

33987.0 Da

IEP (calculated)

7.588

GRAVY (calculated)

-0.190

Length

303 amino acids

Sequence
(BLAST)

001: MECRDGSLST LNGTDDHRVI EIFEQLTSES SNRKKKECEE GVNELFSILE VIRKMHQLDI KPNVVTFSAI LNACSRCNSF EDASMLLGEL KPFDDQVYGV
101: VHGLLMGRRE NVWLQARSLF DKVKEMDGST ASAFYNALTD MLWHFGQKRG AQIVALEGRS RQVWENVWST SCLDLHLMSS GAARAMVHAW LLNIRSIVYE
201: GHELPKVMSI LTGWGKHSKV VGDGALRPAV ESLLRGMDAP FYLSKCNMGR FASSGSVVAT WLRESATLKL LILHDHLTTK ANTTMRSRDQ QGQDSLKLQP
301: LLL

Best Arabidopsis Sequence Match ( AT2G31400.1 )
(BLAST)

001: MASTPPHWVT TTNNHRPWLP QRPRPGRSVT SAPPSSSASV SSAHLSQTTP NFSPLQTPKS DFSGRQSTRF VSPATNNHRQ TRQNPNYNHR PYGASSSPRG
101: SAPPPSSVAT VAPAQLSQPP NFSPLQTPKS DLSSDFSGRR STRFVSKMHF GRQKTTMATR HSSAAEDALQ NAIDFSGDDE MFHSLMLSFE SKLCGSDDCT
201: YIIRELGNRN ECDKAVGFYE FAVKRERRKN EQGKLASAMI STLGRYGKVT IAKRIFETAF AGGYGNTVYA FSALISAYGR SGLHEEAISV FNSMKEYGLR
301: PNLVTYNAVI DACGKGGMEF KQVAKFFDEM QRNGVQPDRI TFNSLLAVCS RGGLWEAARN LFDEMTNRRI EQDVFSYNTL LDAICKGGQM DLAFEILAQM
401: PVKRIMPNVV SYSTVIDGFA KAGRFDEALN LFGEMRYLGI ALDRVSYNTL LSIYTKVGRS EEALDILREM ASVGIKKDVV TYNALLGGYG KQGKYDEVKK
501: VFTEMKREHV LPNLLTYSTL IDGYSKGGLY KEAMEIFREF KSAGLRADVV LYSALIDALC KNGLVGSAVS LIDEMTKEGI SPNVVTYNSI IDAFGRSATM
601: DRSADYSNGG SLPFSSSALS ALTETEGNRV IQLFGQLTTE SNNRTTKDCE EGMQELSCIL EVFRKMHQLE IKPNVVTFSA ILNACSRCNS FEDASMLLEE
701: LRLFDNKVYG VVHGLLMGQR ENVWLQAQSL FDKVNEMDGS TASAFYNALT DMLWHFGQKR GAELVALEGR SRQVWENVWS DSCLDLHLMS SGAARAMVHA
801: WLLNIRSIVY EGHELPKVLS ILTGWGKHSK VVGDGALRRA VEVLLRGMDA PFHLSKCNMG RFTSSGSVVA TWLRESATLK LLILHDHITT ATATTTTMKS
901: TDQQQRKQTS FALQPLLL

Arabidopsis Description

GUN1Pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.