CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018246.1-P	Field mustard	plastid	55.24	94.94
Bra018247.1-P	Field mustard	nucleus	33.45	93.73
CDY56616	Canola	plastid	85.87	92.4
CDY15384	Canola	cytosol	42.05	83.8
CDY19091	Canola	cytosol	69.96	81.48
AT2G31400.1	Thale cress	plastid	80.21	74.18
VIT_07s0005g01660.t01	Wine grape	plastid	67.02	65.63
PGSC0003DMT400018827	Potato	cytosol	55.71	62.57
Solyc06g009520.2.1	Tomato	nucleus, plastid	58.66	59.22
GSMUA_Achr2P02090_001	Banana	cytosol	41.93	54.77
Os12t0562300-01	Rice	cytosol	19.08	52.94
KRH45156	Soybean	plastid	48.76	47.15
KRH01436	Soybean	plastid	47.7	46.29
TraesCS5A01G085800.1	Wheat	plastid	45.7	45.22
TraesCS5D01G097800.1	Wheat	plastid	45.47	45.09
TraesCS5B01G091600.1	Wheat	plastid	45.35	44.87
Zm00001d030624_P001	Maize	plastid	45.58	44.48
EES16159	Sorghum	plastid	45.23	44.04
HORVU5Hr1G022350.1	Barley	plastid	23.67	39.11
CDX71198	Canola	cytosol	14.61	21.91
CDY32056	Canola	plastid	20.73	21.76
CDY31603	Canola	plastid	16.25	20.81
CDX73117	Canola	plastid	20.97	20.63
CDX71562	Canola	mitochondrion, plastid	16.61	20.17
CDY45398	Canola	plastid	20.49	20.14
CDX78150	Canola	plastid	11.43	20.0
CDY23832	Canola	plastid	19.2	19.93
CDX73576	Canola	plastid	11.54	19.64
CDY29249	Canola	plastid	18.85	19.58
CDY56509	Canola	plastid	18.73	19.44
CDX79920	Canola	cytosol, plastid	18.37	19.09
CDX86283	Canola	plastid	11.19	18.7
CDX85360	Canola	plastid	11.07	18.61
CDY06027	Canola	plastid	11.43	18.27
CDX71917	Canola	plastid	11.43	17.8
CDY41990	Canola	plastid	9.78	17.62
CDY42639	Canola	plastid	9.89	17.39
CDY31666	Canola	cytosol	12.01	16.37
CDX84260	Canola	cytosol, nucleus, plastid	12.37	16.33
CDY24692	Canola	plastid	9.07	16.04
CDY64953	Canola	cytosol	5.42	15.81
CDY05264	Canola	plastid	9.07	15.71
CDX98345	Canola	cytosol	5.65	15.43
CDX74617	Canola	mitochondrion	6.24	15.1
CDY52317	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.1370.110	MapMan:35.1	UniProt:A0A078FCU8	EnsemblPlants:CDY10802	ProteinID:CDY10802
ProteinID:CDY10802.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00048647001	InterPro:IPR002625
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF01713	PFAM:PF13041	PFAM:PF13812
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF366	InterPro:Pentatricopeptide_repeat	SMART:SM00463
SUPFAM:SSF160443	SUPFAM:SSF48452	InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0004EDFC17	SEG:seg	:	:	:	:

Description

BnaA05g11340DBnaA05g11340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCU8]

Coordinates

chrLK032006:-:821343..824110

Molecular Weight (calculated)

94158.5 Da

IEP (calculated)

8.102

GRAVY (calculated)

-0.211

Length

849 amino acids

Sequence
(BLAST)

001: MASTPPHWSL FTATTTNNHR QTRQQPNHRQ WLPPRVSSSP RGSRSLSAAP PSSPSPVSHR KLPTFSPLLT PNSSPPLSSN FSGRRSTRFV SKMHFNRPKT
101: TTSTRHTPAA ANALHSLTAF SGDDGETTFQ SLISTFEPTL HSSDDYTFLL RELGNRGECD KALLLYHFAV QRERRKNERG KLASAMIGTL GRLGKVDIAK
201: TVFENALACG YGNTVYAFSA LISAYGRSGL HNEAITVFDS MKRYGLRPNL VTYNAVIDAC GKGGMEFSKV AEFFDDMERN GVQPDRITFN SLLGVCSRGG
301: LWEVARSLFH EMANRKIEQD VFSYNTLLDA VCKGGQMDLS FDIFSQMRAN RITPNVVSYS TVIDGFAKAG RFDDALCLFD EMRYLGIALD RVSYNTLLSI
401: YTKVGRDEEA LDVLREMASV GIKKDVVTYN ALLGGYGKRG KYVEVESVFD EMKREGVLPN LLTYSTLIDV YSKGGLYREA MEVFREFKSV GLRGDVVLYS
501: ALIDALCKSG LVGSAVSLID EMSKEGISPN VVTYNSIIDA FGRSAAMECR DGSLSTLNGT DDHCVIEIFE QLTSESSNRK KKECEEGMNE LFSILEVIRK
601: MHQLDIKPNV VTFSAILNAC SRCNSFEDAS MLLEELRVFD NQVYGVVHGL LMGRRENVWL QARSLFDKVK EMDGSTASAF YNALTDMLWH FGQNRGAQLV
701: ALEGRSRQVW ENVWSTSCLD LHLMSSGAAK AMVHAWLLNI RSIVYEGHEL PKVMSILTGW GKHSKVVGDG ALRPAVESLL RGMDAPFHLS KCNMGRFTSS
801: GSAVATWLRE SATLKLLTLH DHLTTNTNTI MRSSDQQGQA SLTLQPLLL

Best Arabidopsis Sequence Match ( AT2G31400.1 )
(BLAST)

001: MASTPPHWVT TTNNHRPWLP QRPRPGRSVT SAPPSSSASV SSAHLSQTTP NFSPLQTPKS DFSGRQSTRF VSPATNNHRQ TRQNPNYNHR PYGASSSPRG
101: SAPPPSSVAT VAPAQLSQPP NFSPLQTPKS DLSSDFSGRR STRFVSKMHF GRQKTTMATR HSSAAEDALQ NAIDFSGDDE MFHSLMLSFE SKLCGSDDCT
201: YIIRELGNRN ECDKAVGFYE FAVKRERRKN EQGKLASAMI STLGRYGKVT IAKRIFETAF AGGYGNTVYA FSALISAYGR SGLHEEAISV FNSMKEYGLR
301: PNLVTYNAVI DACGKGGMEF KQVAKFFDEM QRNGVQPDRI TFNSLLAVCS RGGLWEAARN LFDEMTNRRI EQDVFSYNTL LDAICKGGQM DLAFEILAQM
401: PVKRIMPNVV SYSTVIDGFA KAGRFDEALN LFGEMRYLGI ALDRVSYNTL LSIYTKVGRS EEALDILREM ASVGIKKDVV TYNALLGGYG KQGKYDEVKK
501: VFTEMKREHV LPNLLTYSTL IDGYSKGGLY KEAMEIFREF KSAGLRADVV LYSALIDALC KNGLVGSAVS LIDEMTKEGI SPNVVTYNSI IDAFGRSATM
601: DRSADYSNGG SLPFSSSALS ALTETEGNRV IQLFGQLTTE SNNRTTKDCE EGMQELSCIL EVFRKMHQLE IKPNVVTFSA ILNACSRCNS FEDASMLLEE
701: LRLFDNKVYG VVHGLLMGQR ENVWLQAQSL FDKVNEMDGS TASAFYNALT DMLWHFGQKR GAELVALEGR SRQVWENVWS DSCLDLHLMS SGAARAMVHA
801: WLLNIRSIVY EGHELPKVLS ILTGWGKHSK VVGDGALRRA VEVLLRGMDA PFHLSKCNMG RFTSSGSVVA TWLRESATLK LLILHDHITT ATATTTTMKS
901: TDQQQRKQTS FALQPLLL

Arabidopsis Description

GUN1Pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.