CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73576	Canola	plastid	96.08	93.39
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	92.99	90.38
AT3G53170.2	Thale cress	plastid	83.71	81.36
VIT_13s0064g00400.t01	Wine grape	cytosol	61.44	60.2
KRH14115	Soybean	plastid	58.76	59.25
PGSC0003DMT400008123	Potato	cytosol, plastid	54.85	57.95
Solyc08g045780.2.1	Tomato	cytosol	54.02	56.96
KXG40345	Sorghum	plastid	50.72	50.62
Os03t0115300-00	Rice	plastid	50.72	50.2
Zm00001d027349_P001	Maize	plastid	50.1	50.1
TraesCS4D01G353200.2	Wheat	cytosol	48.87	48.87
HORVU4Hr1G086600.3	Barley	plastid	49.48	48.39
OQU86802	Sorghum	cytosol	30.72	48.22
TraesCS4B01G359900.1	Wheat	plastid	48.45	46.72
TraesCS5A01G528400.1	Wheat	plastid	49.07	44.4
CDX85360	Canola	plastid	41.24	39.6
CDX86283	Canola	plastid	41.03	39.17
GSMUA_Achr11P...	Banana	endoplasmic reticulum	52.37	37.46
CDY24692	Canola	plastid	34.64	35.0
CDY05264	Canola	plastid	34.64	34.29
CDY41990	Canola	plastid	20.82	21.44
CDY42639	Canola	plastid	20.82	20.91
CDY06027	Canola	plastid	18.76	17.14
CDX71917	Canola	plastid	18.76	16.7
CDX71198	Canola	cytosol	18.97	16.25
CDY31603	Canola	plastid	21.65	15.84
CDY31666	Canola	cytosol	19.59	15.25
CDY15384	Canola	cytosol	13.2	15.02
CDX71562	Canola	mitochondrion, plastid	21.65	15.02
CDY64953	Canola	cytosol	8.87	14.78
CDX84260	Canola	cytosol, nucleus, plastid	19.59	14.77
CDX98345	Canola	cytosol	9.28	14.47
CDX74617	Canola	mitochondrion	9.69	13.39
CDY19091	Canola	cytosol	19.18	12.76
CDY32056	Canola	plastid	21.24	12.73
CDY56509	Canola	plastid	20.82	12.35
CDY29249	Canola	plastid	20.62	12.24
CDY10802	Canola	plastid	20.0	11.43
CDY56616	Canola	plastid	17.94	11.03
CDX73117	Canola	plastid	19.59	11.01
CDY45398	Canola	plastid	19.59	11.0
CDY23832	Canola	plastid	16.91	10.02
CDX79920	Canola	cytosol, plastid	16.08	9.55
CDY52317	Canola	cytosol	0.21	5.88

Protein Annotations

EnsemblPlants:CDX78150	EnsemblPlantsGene:GSBRNA2T00129451001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF425
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX78150	ProteinID:CDX78150.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EE8AFF	MapMan:35.1	:	:	:

Description

BnaA09g33450D

Coordinates

chrLK031814:-:1401593..1403737

Molecular Weight (calculated)

54852.7 Da

IEP (calculated)

8.490

GRAVY (calculated)

-0.128

Length

485 amino acids

Sequence
(BLAST)

001: MALIQQPVQG SSSLSANEII QTIHCFSRRV ASVSAMPTTC STKSPKERKD KKTSGLISTR HQVDPKRELS RILRTDAAVK SIERKANSEK YNTLWPKAVL
101: EALDDAIKEN RWQSALKIFS LLRKQHWYEP RCKTYTKLLK LLGNCKQPEQ ASLLFELMLS EGLKPTIDVY TSLISVYGKC SLLEKAFATL EYMKSVSDCT
201: PDVFTFTVFI SCCCKLARFD LVNRVLLEMS YLGVRCSTVT YNTILDGYGK AGLFEEMENV LADMIEDEDS LPDVFTFNSI IGSYGNGGNI RKMESWYNRF
301: QLMGVEPDIT TFNVLILSFG KAGMYKKMSS VMDYMEKRFF SPTVVTYNIV IETFGKAGRI EKMEEVFRKM KYRGVKPNSI TYCSLVDAYS KAGLVGKIDS
401: VLRQVVNSDV VLDTVFFNCI INAYGEAGDL ATMKELYIQM EERKCKPDKI TFATMVKTYA AHGIFDAVRE LEKQMISTCE SSGIL

Best Arabidopsis Sequence Match ( AT3G53170.1 )
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.