Factsheet for HORVU4Hr1G086600.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G359900.1	Wheat	plastid	86.49	85.29
TraesCS4D01G353200.2	Wheat	cytosol	83.06	84.95
TraesCS5A01G528400.1	Wheat	plastid	90.32	83.58
Os03t0115300-00	Rice	plastid	75.2	76.12
KXG40345	Sorghum	plastid	74.4	75.93
Zm00001d027349_P001	Maize	plastid	70.56	72.16
OQU86802	Sorghum	cytosol	43.35	69.58
VIT_13s0064g00400.t01	Wine grape	cytosol	53.43	53.54
KRH14115	Soybean	plastid	50.4	51.98
PGSC0003DMT400008123	Potato	cytosol, plastid	47.18	50.98
Solyc08g045780.2.1	Tomato	cytosol	46.77	50.43
CDX78150	Canola	plastid	48.39	49.48
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	49.19	48.9
AT3G53170.2	Thale cress	plastid	48.79	48.5
CDX73576	Canola	plastid	48.19	47.9
GSMUA_Achr11P...	Banana	endoplasmic reticulum	62.1	45.43
HORVU7Hr1G027800.8	Barley	cytosol	35.48	36.29
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	34.88	29.93
HORVU6Hr1G075250.5	Barley	plastid	18.55	18.4
HORVU2Hr1G035060.2	Barley	cytosol	21.37	16.96
HORVU0Hr1G007320.4	Barley	cytosol	15.32	16.49
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	16.33	15.88
HORVU2Hr1G043170.1	Barley	mitochondrion	19.15	14.37
HORVU3Hr1G114340.4	Barley	mitochondrion	17.94	14.04
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	16.94	13.02
HORVU7Hr1G111000.5	Barley	plastid	19.96	12.13
HORVU2Hr1G056820.1	Barley	plastid	18.55	11.23
HORVU5Hr1G022350.1	Barley	plastid	10.48	10.12
HORVU5Hr1G114630.1	Barley	mitochondrion	16.53	9.84

Protein Annotations

EnsemblPlants:HORVU4Hr1G086600.3	EnsemblPlantsGene:HORVU4Hr1G086600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF425	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI000B46B5CD	UniProt:A0A287PZK5	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr4H:+:634679688..634684060

Molecular Weight (calculated)

55388.5 Da

IEP (calculated)

7.774

GRAVY (calculated)

-0.149

Length

496 amino acids

Sequence
(BLAST)

001: ISPSCFAACH SAPYLLRPAP LHGTMHSPSR CPAATASPPL RGPFVAMAQR GRRPPSSAPP EAEQPAEALA RILRTEAAVS GVSRKASAGS SQHSTRLWPR
101: AVLEALDSAV ASSRWESALE IFELLRKQRW YEPRTQTYAR LLMLLGRCRQ PGPAAALFKL MLSEERLAPT VDVYTALVGA YGYSGLLDEA MAIVDRMKGA
201: DADCKPDEYT FSVLINCCCK SRRFDLIRNV LDEMSYLGLG CNIVIHNGMI DGYGKAGMLE EMEDALSNML QDGDNVPDIY TMNSIISAYG NRGRVADMER
301: WYTEFQLMGV EPDTRTFNIM MKSYGKANMP DKMLSVLKYM KRRFFSPSAA TFNIIIECFG RAGNIEKMEY YFRLMKIQGV KPNPITYCSL VNGYSKAGLL
401: DMVPLIIRQT ENTDVVLDTP FFNCVISAYA KSGDIKIMEE MLLLMKEKKC KPGKVIYNTM IQAYIAHGME EAAKLLETEM ERFDNKLLGP IPEVDY

Best Arabidopsis Sequence Match ( AT3G53170.1 )
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.