Factsheet for Zm00001d027349_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40345	Sorghum	plastid	93.4	93.21
OQU86802	Sorghum	cytosol	53.4	83.82
Os03t0115300-00	Rice	plastid	75.05	74.29
TraesCS4D01G353200.2	Wheat	cytosol	71.75	71.75
HORVU4Hr1G086600.3	Barley	plastid	72.16	70.56
TraesCS4B01G359900.1	Wheat	plastid	70.72	68.19
TraesCS5A01G528400.1	Wheat	plastid	72.78	65.86
VIT_13s0064g00400.t01	Wine grape	cytosol	56.29	55.15
KRH14115	Soybean	plastid	54.23	54.68
PGSC0003DMT400008123	Potato	cytosol, plastid	49.28	52.07
Solyc08g045780.2.1	Tomato	cytosol	49.07	51.74
CDX78150	Canola	plastid	50.1	50.1
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	50.93	49.5
AT3G53170.2	Thale cress	plastid	50.93	49.5
CDX73576	Canola	plastid	50.31	48.9
GSMUA_Achr11P...	Banana	endoplasmic reticulum	61.86	44.25
Zm00001d037476_P001	Maize	plastid	38.56	38.01
Zm00001d018693_P001	Maize	plastid	34.85	29.6
Zm00001d052240_P001	Maize	plastid	19.79	19.24
Zm00001d015377_P003	Maize	plastid	18.76	15.24
Zm00001d024248_P001	Maize	plastid	18.76	15.17
Zm00001d014751_P003	Maize	plastid	16.49	15.04
Zm00001d022003_P001	Maize	plastid	24.54	14.97
Zm00001d021716_P001	Maize	plastid	19.59	14.22
Zm00001d036698_P001	Maize	plastid	22.89	14.12
Zm00001d021871_P002	Maize	plastid	18.35	11.06
Zm00001d030624_P001	Maize	plastid	19.59	10.92
Zm00001d022599_P002	Maize	plastid	18.35	9.96

Protein Annotations

EnsemblPlants:Zm00001d027349_P001	EnsemblPlants:Zm00001d027349_T001	EnsemblPlantsGene:Zm00001d027349	EntrezGene:103630811	Gene3D:1.25.40.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR24015	PANTHER:PTHR24015:SF425	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:ONL92917.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0002215AF5	UniProt:A0A1D6JL94	MapMan:35.1	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr1:-:3443598..3446350

Molecular Weight (calculated)

53992.3 Da

IEP (calculated)

8.492

GRAVY (calculated)

-0.249

Length

485 amino acids

Sequence
(BLAST)

001: MNLPTPLPPT SSPAAAPRAS RAPVVPAARR GTGRRRRRQK PSSSPSTRET EAEYEQPDAL ARILRTEAAI SGVSRKAAAA RQQSTNLWPR AVLEALDSAV
101: AACRWESALE IFELLRKQHW YEPRSQTYAR LLMMLGKCRQ PGPAAGLFRE MLSERLRPTA DVYTALIGAY GYSGLLEHAL AAVEQMKGAA DCKPDGYTFS
201: VLVDCCAKSR RFDLIPAVLD EMSYLGIECN SVIHNAIIDG YGKAAMFEEM EGALSTMLES GSNVPDIYTM NSVVGAYGNH GRTDEMEKSY SEFQLMGVEP
301: DTKTFNIMIR SYGKAGMYVK MMSIFRYMKK RFFSPTAVTF NTVIECFGRA GDIEKMEYYF RLMKIQGVKP NPITYCSLVN GYSKAGLLDK VAGVIRQTEN
401: TNVVLDTPFF NCVISAYAKS GDIKIMEEML QLMKEKRCKP DRITYATMIQ AYTAHGMDEA AMLLEIEAER FDKRLLGSVS DIDGK

Best Arabidopsis Sequence Match ( AT3G53170.1 )
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.