Factsheet for Zm00001d022003_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36606	Sorghum	plastid	91.57	94.18
HORVU2Hr1G035060.2	Barley	cytosol	66.16	84.16
TraesCS2A01G194800.1	Wheat	endoplasmic reticulum, extracellular	49.06	83.87
Os07t0590600-00	Rice	plastid	78.87	79.97
TraesCS2D01G193100.1	Wheat	plastid	79.75	79.95
TraesCS2B01G212000.1	Wheat	plastid	78.74	78.74
GSMUA_Achr6P16830_001	Banana	cytosol	45.66	64.59
CDX71198	Canola	cytosol	41.01	57.6
KRH27571	Soybean	plastid	37.74	55.56
VIT_03s0091g00440.t01	Wine grape	plastid	52.2	51.17
CDY32056	Canola	plastid	49.69	48.83
Bra035290.1-P	Field mustard	plastid	48.93	48.62
PGSC0003DMT400066525	Potato	plastid	49.94	48.24
Solyc01g107320.2.1	Tomato	plastid	49.56	48.11
AT5G02860.2	Thale cress	plastid	49.31	47.86
KRG91073	Soybean	plastid	47.04	47.1
Zm00001d036698_P001	Maize	plastid	33.21	33.59
Zm00001d027349_P001	Maize	plastid	14.97	24.54
Zm00001d037476_P001	Maize	plastid	14.59	23.58
Zm00001d015377_P003	Maize	plastid	16.23	21.61
Zm00001d021716_P001	Maize	plastid	17.48	20.81
Zm00001d052240_P001	Maize	plastid	12.58	20.04
Zm00001d018693_P001	Maize	plastid	14.34	19.96
Zm00001d014751_P003	Maize	plastid	12.58	18.8
Zm00001d030624_P001	Maize	plastid	20.5	18.74
Zm00001d021871_P002	Maize	plastid	18.74	18.51
Zm00001d024248_P001	Maize	plastid	13.46	17.83
Zm00001d022599_P002	Maize	plastid	20.0	17.79

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103633383	MapMan:16.12.4.3	UniProt:A0A1D6III6	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM59299.1	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF308	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002213FE4	EnsemblPlantsGene:Zm00001d022003	EnsemblPlants:Zm00001d022003_P001	EnsemblPlants:Zm00001d022003_T001
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr7:+:167819333..167821720

Molecular Weight (calculated)

88677.1 Da

IEP (calculated)

9.173

GRAVY (calculated)

-0.245

Length

795 amino acids

Sequence
(BLAST)

001: MAEMLALPLP LRAPAPPPRP TIPNPIVTHR QPHTPSSSPP RLFSPNSLLS TSRPTPASSS RKPRLGRPLD TFRGEQPWHL PPSLSLPARR ALLALLADPA
101: EHASPRDVLS ALPETDLPAV VNTLASRGGH PGIAVAVVRA ARDLHGDRAL HHPRVLPTAI RVFARAGCLA EASAILEAAP APDASAYTAL VSAFSRAGRF
201: RDAVAVFQRM VDGGVQPALV TYNVVFHAYS KMSVPWKEVV ALVDSMKEDG IERDRYTYNT LISCCRRRGL HREAAQVFDE MKAAGFEPDK VTFNSLLDVY
301: GKARKHEEAI GVLKRMENAG CTPSVVTYNS LISAYVKDGL LEEALELKQE MEFRGMKPDV VTYTTLISGL DRVGKIDAAL ATYSEMVRNG CSPNLCTYNA
401: LIKLHGVRGK FTEMMAVFDD LRSAGYVPDV VTWNTLLSVF GQNGLDSEVS GVFKEMKKAG YIPERDTYVS LISSYSRCGL FDQAMEIYKR MIEAGIYPDI
501: STYNAVLSAL ARGGRWEQAE KLFAEMVDRD CKPDELSYSS LLHAYANAKK LDKMKTLSED IYAERIERHN WLVKTLVLVN NKVNNLPETE KAFQELRRRR
601: CSLDINVLNA MVSIYGKNKM VKKVEEVLSL MMENSINHSA ATYNSLMHMY SRLGDCEKCE SILTEIKSSG MRPDRYSYNT VIYAYGRKGQ MKEASRLFSE
701: MKCSGVKPDI VTYNIFIKSY VANIMFEEAI DLVRYLVTQG CRPNERTFNS ILQGYSRHGR MVEAKSFLSN LPKIYPGISK QEKQRLSELL AKHTS

Best Arabidopsis Sequence Match ( AT5G02860.3 )
(BLAST)

001: MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g02860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYZ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.