CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022003_P001	Maize	plastid	94.18	91.57
TraesCS2A01G194800.1	Wheat	endoplasmic reticulum, extracellular	50.71	84.3
HORVU2Hr1G035060.2	Barley	cytosol	67.01	82.88
Os07t0590600-00	Rice	plastid	80.21	79.08
TraesCS2D01G193100.1	Wheat	plastid	80.47	78.44
TraesCS2B01G212000.1	Wheat	plastid	79.56	77.36
GSMUA_Achr6P16830_001	Banana	cytosol	47.61	65.48
CDX71198	Canola	cytosol	42.56	58.13
KRH27571	Soybean	plastid	39.72	56.85
VIT_03s0091g00440.t01	Wine grape	plastid	54.2	51.66
CDY32056	Canola	plastid	51.49	49.2
Bra035290.1-P	Field mustard	plastid	50.45	48.75
PGSC0003DMT400066525	Potato	plastid	51.49	48.36
AT5G02860.2	Thale cress	plastid	51.23	48.35
Solyc01g107320.2.1	Tomato	plastid	51.1	48.23
KRG91073	Soybean	plastid	49.03	47.73
KXG20531	Sorghum	plastid	35.06	34.92
KXG40345	Sorghum	plastid	14.88	23.66
OQU86802	Sorghum	cytosol	9.31	23.3
EER87934	Sorghum	plastid	14.62	22.97
OQU77078	Sorghum	mitochondrion	14.49	22.67
OQU84443	Sorghum	cytosol	16.3	20.83
EER99505	Sorghum	plastid	17.72	20.51
KXG30749	Sorghum	plastid	13.07	20.28
EER97871	Sorghum	plastid	14.1	19.46
KXG36530	Sorghum	plastid	19.66	18.56
EES16159	Sorghum	plastid	20.57	18.23
EES13486	Sorghum	plastid	14.1	18.11
OQU90703	Sorghum	plastid	20.18	17.39

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.3	UniProt:A0A1B6QFB9	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KXG36606	ProteinID:KXG36606	ProteinID:KXG36606.2
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF308	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3002G360200	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0009DC8B57	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:72241210..72243600

Molecular Weight (calculated)

86510.8 Da

IEP (calculated)

9.284

GRAVY (calculated)

-0.254

Length

773 amino acids

Sequence
(BLAST)

001: MAETLALPLP LRAPAPPPRP TIPNPIIAHR QPHTPSSSSP PRLFSPTSLL STSRPTPASS SRKPRLGRPR DTSRGDQPWH LPPSLSLPAR RALLALLADP
101: AEHASPRDVL SALPETDLPA VVNALASRGG HPGAALAVVR AARDLHGDRA LHHPRVLPTA IRVAYTALVS EFSRAGRFRD AVAVFRRMVD GGVQPALVTY
201: NVVLHVYSKM SVPWKEVVVL VDSMKEDGIE LDRYTYNTLI SCCRRRGLYR EAAQMFDEMK AAGFEPDKVT FNSLLDVYGK ARRHEEAIGV LKKMENAGCT
301: PSVVTYNSLI SAYVKDGLLE EALELKQEME FRGMKPDVVT YTTLISGLDR IGKIDAALAT YSEMVRNGCS PNLCTYNALI KMHGVRGKFT EMMIVFDDLR
401: SAGYVPDVVT WNTLLAVFGQ NGLDSEVSGV FKEMKKAGYI PERDTYVSLI SSYSRCGLFD QAMEIYKRMI EAGIYPDIST YNAVLSALAR GGRWVQAEKL
501: FAEMEDRDCK PDELSYSSLL HAYANAKKLD KMKALSEDIY AQRIEPHNWL VKTLVLVNNK VNSLSETEKA FQELRRRRCS LDINVLNAMV SIYGKNKMVK
601: KVEEVLTLMK ENSINHSAAT YNSLMHMYSR LGDCEKCEAI LTEIKSSGMR PDRYSYNTVI YAYGRKGQMK EASRLFSEMK CSGVKPDIVT YNIFIKSYVA
701: NLMFEEAIDL VRYLVAQGCK PNERTYNSIL EGYCRHGRMV EAKSFLSNLP KIYPGISKEE KHRLLELLAK RTS

Best Arabidopsis Sequence Match ( AT5G02860.3 )
(BLAST)

001: MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g02860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYZ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.