CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1
nucleus 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27571	Soybean	plastid	48.74	71.67
CDX71198	Canola	cytosol	49.5	69.43
VIT_03s0091g00440.t01	Wine grape	plastid	69.02	67.57
Solyc01g107320.2.1	Tomato	plastid	66.88	64.84
GSMUA_Achr6P16830_001	Banana	cytosol	45.84	64.77
PGSC0003DMT400066525	Potato	plastid	66.37	64.03
Bra035290.1-P	Field mustard	plastid	62.72	62.25
CDY32056	Canola	plastid	63.1	61.93
AT5G02860.2	Thale cress	plastid	62.85	60.93
TraesCS2A01G194800.1	Wheat	endoplasmic reticulum, extracellular	33.88	57.85
HORVU2Hr1G035060.2	Barley	cytosol	43.2	54.88
KXG36606	Sorghum	plastid	47.73	49.03
Os07t0590600-00	Rice	plastid	48.36	48.98
TraesCS2D01G193100.1	Wheat	plastid	47.73	47.79
TraesCS2B01G212000.1	Wheat	plastid	47.48	47.42
Zm00001d022003_P001	Maize	plastid	47.1	47.04
KRH12254	Soybean	plastid	37.03	35.46
KRH37281	Soybean	plastid	36.52	34.94
KRH57931	Soybean	cytosol	3.27	24.3
KRH14115	Soybean	plastid	14.48	23.91
KRH02451	Soybean	plastid	14.61	23.77
KRH02371	Soybean	plastid	14.48	23.57
KRH60945	Soybean	plastid	19.65	22.87
KRH51622	Soybean	cytosol, plastid	19.9	22.7
KRH37687	Soybean	plastid	13.85	22.68
KRH27783	Soybean	cytosol, plastid	14.61	22.22
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	17.38	22.08
KRH46714	Soybean	plastid	14.11	21.75
KRH77730	Soybean	plastid	13.73	20.84
KRH56998	Soybean	nucleus	20.4	18.88
KRH03384	Soybean	nucleus	20.4	18.86
KRG90623	Soybean	nucleus	12.97	18.33
KRH36131	Soybean	plastid	12.72	18.26
KRH45156	Soybean	plastid	19.9	18.0
KRH59429	Soybean	plastid	11.34	17.89
KRH01436	Soybean	plastid	19.52	17.71
KRH66918	Soybean	cytosol	18.26	17.32
KRH43291	Soybean	plastid	11.21	16.92
KRG95241	Soybean	plastid	12.47	14.54

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100813079	MapMan:16.12.4.3	EMBL:ACUP02012660	EnsemblPlantsGene:GLYMA_20G131400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1NG06	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRG91073	ProteinID:KRG91073	ProteinID:KRG91073.1
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF308
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233DEE4	SEG:seg

Description

hypothetical protein

Coordinates

chr20:+:37207167..37210417

Molecular Weight (calculated)

89253.0 Da

IEP (calculated)

7.775

GRAVY (calculated)

-0.166

Length

794 amino acids

Sequence
(BLAST)

001: MAQKLSLPLI LPNPPPSTPT KPPFPTPPSS SSITPLLQDL FLNQNHSSTP HLHLSPSTHR TPRSPHRLSP QAHRILQTLI HPSFDSNRFH EILPLLFDQP
101: SSSSLSWDIL GIIKGLGFNN KFDLALSLFD FIRTRNDRVS LLNGSVIAVI VSILGKTGRV SRAASLLHNL EADGFEVDVY GYTSLITAYA NNKKYRDALK
201: VFGKMKEVGC EPTLITYNAI LNVYGKMGMP WAKIIALVQD MKCHGLAPDL CTYNTLISCC RAGSLYEEAL DLFEEIKVAG FRPDAVTYNA LLDVYGKSRR
301: PKEAMEVLKQ MESNSFRPSV VTYNSLVSAY VRGGLLEDAL VLKRKMVDKG IKPDVYTYTT LLSGFVNAGK EELAMEVFEE MRKVGCKPNI CTFNALIKMY
401: GDRGKFEEMV KVFKEIKVCK CSPDIVTWNT LLAVFGQNGM DSEVSGVFEE MKRSRFAPER DTFNTLISAY GRCGSFDQAM AAYKRMLEAG VSPDLSTYNA
501: VLATLARGGL WEQSEKVLAE MKDGGCKPNE VTYSSLLHAY ANGREVERMN ALAEEIYSGT IKTHAVLLKT LVLVNSKVDL LVETERAFLE FRKRGISPDV
601: TTSNAMLSIY GRKKMVPKAN EILNFMYESG LTLSLTSYNS LMYMYSRTEN FHKSEQIFRE ILDKGIEPDV ISYNIVIYAY CRNDMMDEAK RIIEEMKVPA
701: PVPDVVTYNT FIAAYAADSM FVEAIDVIRY MIKQGCKPNH NTYNSIVDWY CKLKLRDEAC SFVQNLGDLD PQISEDEKSR LLERIAKKWS QVDP

Best Arabidopsis Sequence Match ( AT5G02860.3 )
(BLAST)

001: MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g02860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYZ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.