CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12254	Soybean	plastid	94.94	95.05
VIT_11s0052g00600.t01	Wine grape	plastid	66.63	67.36
PGSC0003DMT400010473	Potato	plastid	62.77	61.88
Solyc07g017760.1.1	Tomato	plastid	62.65	61.76
AT2G18940.1	Thale cress	plastid	60.84	61.44
Bra024454.1-P	Field mustard	plastid	60.0	60.95
CDY29249	Canola	plastid	59.88	60.83
CDY56509	Canola	plastid	59.64	60.51
GSMUA_Achr2P04910_001	Banana	plastid	55.9	55.7
KXG20531	Sorghum	plastid	50.12	53.61
Zm00001d036698_P001	Maize	plastid	49.64	52.42
Os05t0275000-01	Rice	cytosol, plastid	49.88	52.21
TraesCS7A01G495500.1	Wheat	plastid	48.19	49.32
TraesCS7D01G482800.1	Wheat	plastid	48.31	49.26
TraesCS7B01G401800.2	Wheat	plastid	48.19	49.08
HORVU7Hr1G111000.5	Barley	plastid	42.41	43.14
KRH27571	Soybean	plastid	24.22	37.22
KRG91073	Soybean	plastid	34.94	36.52
KRH51622	Soybean	cytosol, plastid	20.84	24.86
KRH60945	Soybean	plastid	20.0	24.34
KRH57931	Soybean	cytosol	3.13	24.3
KRH14115	Soybean	plastid	12.89	22.25
KRH02451	Soybean	plastid	12.89	21.93
KRH02371	Soybean	plastid	12.65	21.52
KRH46714	Soybean	plastid	13.01	20.97
KRH37687	Soybean	plastid	11.69	20.0
KRH77730	Soybean	plastid	12.53	19.89
KRH27783	Soybean	cytosol, plastid	12.29	19.54
KRH56998	Soybean	nucleus	20.0	19.35
KRH03384	Soybean	nucleus	19.76	19.09
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	14.34	19.04
KRH36131	Soybean	plastid	11.93	17.9
KRG90623	Soybean	nucleus	12.05	17.79
KRH66918	Soybean	cytosol	17.47	17.32
KRH01436	Soybean	plastid	17.47	16.57
KRH45156	Soybean	plastid	17.47	16.51
KRH59429	Soybean	plastid	9.88	16.3
KRH43291	Soybean	plastid	9.64	15.21
KRG95241	Soybean	plastid	12.17	14.83

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100806053	MapMan:16.12.4.3	EMBL:ACUP02005436	EnsemblPlantsGene:GLYMA_09G056200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1L1A2	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH37281	ProteinID:KRH37281	ProteinID:KRH37281.1
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF343
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002338FF4	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:5031908..5034400

Molecular Weight (calculated)

93744.2 Da

IEP (calculated)

6.687

GRAVY (calculated)

-0.257

Length

830 amino acids

Sequence
(BLAST)

001: MEGTLFPNRP VLPVPSHKPT QPPLKFKPTF LPPQSPPPSP PPSFQLDSLL QHLQHLSSVP ITTHTLTIVP PSLDNTKNFN KSVNSKHPTL GSDPIIDEDQ
101: FDDAKFRFLS DKGKLLLNSV VGSPLHELND FFNSVKFELL EADFPSLLKA LDLSGNWERA LLLFEWGWLH FGSDQNLRLD NQVVELMVRI LGRESQHSIA
201: SKLFDLIPVE KYSLDVRAYT TILHAYARSG KYKRAIDLFD KMEGIGLDPT LVTYNVMLDV YGKMGRSWGR ILELLDEMRS KGLEFDEFTC STVISACGRE
301: GMLDEARKFL AELKLNGYKP GTVMYNSMLQ VFGKAGIYTE ALSILKEMED NNCPPDSITY NELAATYVRA GFLDEGMAVI DTMTSKGVMP NAITYTTVID
401: AYGKAGREDD ALRLFSKMKD LGCAPNVYTY NSVLAMLGKK SRTEDVIKVL CEMKLNGCAP NRATWNTMLA VCSEEGKHNY VNKVLREMKN CGFEPDKDTF
501: NTLISSYARC GSEVDSAKMY GEMVKSGFTP CVTTYNALLN ALAHRGDWKA AESVIQDMQT KGFKPNETSY SLLLHCYSKA GNVRGIEKVE KEIYDGQVFP
601: SWILLRTLVL SNHKCRHLRG MERAFDQLQK YGYKPDLVVI NSMLSMFSRN KMFSKAREML HFIHECGLQP NLFTYNCLMD LYVREDECWK AEEVLKGIQN
701: SVPEPDVVSY NTVIKGFCRK GLMQEAIRVL SEMTTKGIQP TIVTYNTFLS GYAGMELFDE ANEVIRFMIE HNCRPSELTY KILVDGYCKA GKHEEAMDFV
801: TKIKEIDISF DDKSVKRLGS CIREKVGSTL

Best Arabidopsis Sequence Match ( AT2G18940.1 )
(BLAST)

001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.