Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024454.1-P | Field mustard | plastid | 87.47 | 88.0 |
| CDY56509 | Canola | plastid | 87.35 | 87.78 |
| CDY29249 | Canola | plastid | 86.98 | 87.52 |
| VIT_11s0052g00600.t01 | Wine grape | plastid | 67.4 | 67.48 |
| Solyc07g017760.1.1 | Tomato | plastid | 65.21 | 63.66 |
| PGSC0003DMT400010473 | Potato | plastid | 65.21 | 63.66 |
| KRH12254 | Soybean | plastid | 62.17 | 61.64 |
| KRH37281 | Soybean | plastid | 61.44 | 60.84 |
| GSMUA_Achr2P04910_001 | Banana | plastid | 57.66 | 56.9 |
| KXG20531 | Sorghum | plastid | 50.49 | 53.48 |
| Zm00001d036698_P001 | Maize | plastid | 50.73 | 53.05 |
| Os05t0275000-01 | Rice | cytosol, plastid | 50.37 | 52.21 |
| TraesCS7D01G482800.1 | Wheat | plastid | 50.49 | 50.98 |
| TraesCS7A01G495500.1 | Wheat | plastid | 50.0 | 50.68 |
| TraesCS7B01G401800.2 | Wheat | plastid | 50.12 | 50.55 |
| HORVU7Hr1G111000.5 | Barley | plastid | 44.4 | 44.73 |
| AT5G02860.2 | Thale cress | plastid | 35.89 | 36.02 |
| AT5G42310.1 | Thale cress | plastid | 19.71 | 22.85 |
| AT5G48730.1 | Thale cress | plastid | 13.38 | 21.65 |
| AT2G35130.2 | Thale cress | endoplasmic reticulum, golgi | 15.33 | 20.55 |
| AT3G06430.1 | Thale cress | plastid | 12.04 | 20.37 |
| AT3G53170.2 | Thale cress | plastid | 11.8 | 19.44 |
| AT1G74850.1 | Thale cress | plastid | 20.32 | 19.37 |
| AT4G39620.1 | Thale cress | plastid | 13.26 | 19.36 |
| AT2G31400.1 | Thale cress | plastid | 20.56 | 18.41 |
| AT2G41720.1 | Thale cress | cytosol, plastid | 18.13 | 18.13 |
| AT5G36300.2 | Thale cress | cytosol | 7.18 | 17.88 |
| AT3G59040.2 | Thale cress | endoplasmic reticulum | 12.65 | 17.63 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:16.12.4.3 | EntrezGene:816411 | UniProt:A0A178VL91 | ProteinID:AAC09028.1 | ProteinID:AEC06830.1 |
| ArrayExpress:AT2G18940 | EnsemblPlantsGene:AT2G18940 | RefSeq:AT2G18940 | TAIR:AT2G18940 | RefSeq:AT2G18940-TAIR-G | EnsemblPlants:AT2G18940.1 |
| TAIR:AT2G18940.1 | EMBL:AY056798 | Unigene:At.26294 | EMBL:BT010749 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_179484.1 |
| UniProt:O64624 | ProteinID:OAP07230.1 | PFAM:PF12854 | PFAM:PF13041 | PFAM:PF13812 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF343 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 |
| TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000A9EDA | SEG:seg | : | : |
Description
Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
Coordinates
chr2:-:8203705..8206478
Molecular Weight (calculated)
92243.6 Da
IEP (calculated)
8.126
GRAVY (calculated)
-0.222
Length
822 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.