CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024454.1-P	Field mustard	plastid	99.51	99.51
CDY56509	Canola	plastid	97.92	97.8
AT2G18940.1	Thale cress	plastid	87.52	86.98
VIT_11s0052g00600.t01	Wine grape	plastid	65.48	65.16
Solyc07g017760.1.1	Tomato	plastid	63.77	61.88
PGSC0003DMT400010473	Potato	plastid	63.65	61.76
KRH12254	Soybean	plastid	61.32	60.43
KRH37281	Soybean	plastid	60.83	59.88
GSMUA_Achr2P04910_001	Banana	plastid	56.92	55.82
KXG20531	Sorghum	plastid	51.04	53.74
Zm00001d036698_P001	Maize	plastid	51.16	53.18
Os05t0275000-01	Rice	cytosol, plastid	50.8	52.33
TraesCS7D01G482800.1	Wheat	plastid	51.04	51.23
TraesCS7A01G495500.1	Wheat	plastid	50.31	50.68
TraesCS7B01G401800.2	Wheat	plastid	50.31	50.43
HORVU7Hr1G111000.5	Barley	plastid	44.8	44.85
CDX71198	Canola	cytosol	28.89	41.7
CDY32056	Canola	plastid	36.35	36.71
CDY31603	Canola	plastid	18.85	23.23
CDX71562	Canola	mitochondrion, plastid	19.22	22.46
CDX86283	Canola	plastid	13.59	21.85
CDX85360	Canola	plastid	13.46	21.78
CDX78150	Canola	plastid	12.24	20.62
CDY41990	Canola	plastid	11.87	20.59
CDY42639	Canola	plastid	12.0	20.29
CDY31666	Canola	cytosol	15.42	20.22
CDY19091	Canola	cytosol	17.99	20.16
CDY24692	Canola	plastid	11.75	20.0
CDX73576	Canola	plastid	12.12	19.84
CDY05264	Canola	plastid	11.87	19.8
CDY06027	Canola	plastid	12.85	19.77
CDY64953	Canola	cytosol	6.98	19.59
CDX84260	Canola	cytosol, nucleus, plastid	15.18	19.28
CDY56616	Canola	plastid	18.48	19.14
CDX73117	Canola	plastid	20.2	19.12
CDY45398	Canola	plastid	20.2	19.1
CDX71917	Canola	plastid	12.73	19.08
CDY10802	Canola	plastid	19.58	18.85
CDX74617	Canola	mitochondrion	8.08	18.8
CDX79920	Canola	cytosol, plastid	18.73	18.73
CDY23832	Canola	plastid	18.48	18.46
CDX98345	Canola	cytosol	6.85	18.01
CDY15384	Canola	cytosol	8.69	16.67
CDY52317	Canola	cytosol	0.12	5.88

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.3	UniProt:A0A078GVR4	EnsemblPlants:CDY29249	ProteinID:CDY29249	ProteinID:CDY29249.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00042182001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF343	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDCDEA
SEG:seg	:	:	:	:	:

Description

BnaA06g25080DBnaA06g25080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVR4]

Coordinates

chrLK032233:-:518957..521410

Molecular Weight (calculated)

91579.0 Da

IEP (calculated)

8.535

GRAVY (calculated)

-0.194

Length

817 amino acids

Sequence
(BLAST)

001: MDAALSPLKP PYPIQSKRPP PPQSSNHSLK FSSATLHLPP PSPSPSFPLD SLLHHLVHLS SSPRHATSPP AARFPSLEVK SAKPFSSPVL GINGSLKLLC
101: KKETALLNSI LAHPLSELSS FFDSAKSELI RTDVFSLVKA LDDSGNWERA VLLFEWLVSA SNSGDLKLDH YVIEIVVRIL GRESQYSVAA KLLDKIPLQE
201: YTLDVRAYTT ILYAYSRTGK YERAINLFER MKEMGPSPTL VTYNVILDVF GRMGRSWGKI VLVLDEIRSK GMKFDEFTCS TVLSACAREG LLREAKEFFA
301: EIKSSGYEPG TVTYNALLQV YGKAGVYTEA LKILKEMEEN NCPADSVTYN ELVAAYVRAG FTKEAAGVIE VMTGKGVMPN AITYTTVIDA YGKSGKEEEA
401: LKLFYTMKRA GCVPNTCTYN VVLSMLGKKS RSNEMVKMLC DMKSSGCSPN RVTWNTMLAL CGNKGMDKYV NRVFREMKSC GFEPDRDTFN TLISAYGRCG
501: SEVDASKMFG EMTRAGFNAC VTTYNALLNA LSRQGDWRSG EGVISDMKSK GFKPTETSYS LMLQCYAKGG NVLGIERIEK EIVEGQIFPS WMLLRTLLLA
601: NFKCRALAGM ERAFALFKKH GYKPDMVIFN SMLSIFTRNN MYDQAHEILQ SIRDHELTPD LVTYNSLMDM YVRRGECWKA EEILKSLEKS KLRPDLVSYN
701: TVIKGFCRKG LMQEAVRMLS EMTERGIRPC IFTYNTFVSG YTAMGMFGEI EDVIECMGKN KCRPNELTYK MVVDGYCRGG RYSEAMEFVS KIKTLDAYFD
801: DQSIQRLAVR VRENLES

Best Arabidopsis Sequence Match ( AT2G18940.1 )
(BLAST)

001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.