CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10802	Canola	plastid	92.4	85.87
CDY15384	Canola	cytosol	42.84	79.34
CDY19091	Canola	cytosol	71.74	77.64
AT2G31400.1	Thale cress	plastid	80.61	69.28
VIT_07s0005g01660.t01	Wine grape	plastid	66.92	60.9
PGSC0003DMT400018827	Potato	cytosol	56.27	58.73
Solyc06g009520.2.1	Tomato	nucleus, plastid	59.32	55.65
Os12t0562300-01	Rice	cytosol	21.04	54.25
GSMUA_Achr2P02090_001	Banana	cytosol	41.57	50.46
KRH45156	Soybean	plastid	49.43	44.42
KRH01436	Soybean	plastid	48.42	43.66
TraesCS5A01G085800.1	Wheat	plastid	46.13	42.42
TraesCS5D01G097800.1	Wheat	plastid	45.88	42.29
TraesCS5B01G091600.1	Wheat	plastid	45.5	41.84
Zm00001d030624_P001	Maize	plastid	45.5	41.26
EES16159	Sorghum	plastid	45.12	40.83
HORVU5Hr1G022350.1	Barley	plastid	21.8	33.46
CDY32056	Canola	plastid	20.66	20.15
CDY31603	Canola	plastid	16.48	19.61
CDX71198	Canola	cytosol	13.94	19.43
CDX71562	Canola	mitochondrion, plastid	16.86	19.03
CDX73117	Canola	plastid	20.53	18.77
CDY45398	Canola	plastid	20.28	18.52
CDY29249	Canola	plastid	19.14	18.48
CDY23832	Canola	plastid	18.76	18.09
CDY56509	Canola	plastid	18.76	18.09
CDX78150	Canola	plastid	11.03	17.94
CDX86283	Canola	plastid	11.28	17.52
CDX85360	Canola	plastid	11.15	17.43
CDX79920	Canola	cytosol, plastid	18.0	17.38
CDX73576	Canola	plastid	10.9	17.23
CDY06027	Canola	plastid	11.15	16.57
CDX71917	Canola	plastid	11.03	15.96
CDY41990	Canola	plastid	9.38	15.71
CDY42639	Canola	plastid	9.51	15.53
CDX98345	Canola	cytosol	6.08	15.43
CDY24692	Canola	plastid	9.13	15.0
CDY05264	Canola	plastid	9.25	14.9
CDX84260	Canola	cytosol, nucleus, plastid	11.66	14.31
CDY31666	Canola	cytosol	11.28	14.29
CDY64953	Canola	cytosol	4.94	13.4
CDX74617	Canola	mitochondrion	5.83	13.11
CDY52317	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078J2V5	EnsemblPlants:CDY56616	ProteinID:CDY56616	ProteinID:CDY56616.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00019793001	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF01713	PFAM:PF13041	PFAM:PF13812	PFAM:PF17177
InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF366	InterPro:Pentatricopeptide_repeat
SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0004EEA809	SEG:seg	:	:	:	:

Description

BnaCnng30750DBnaCnng30750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2V5]

Coordinates

chrLK033504:-:34827..37745

Molecular Weight (calculated)

87674.8 Da

IEP (calculated)

7.999

GRAVY (calculated)

-0.242

Length

789 amino acids

Sequence
(BLAST)

001: MASTPPHWSL FTATTSNNRH TRQQPNHRQW LPPPPPSSPS PVSHRKLPTF SPLLTPNSSP PLSSDFSGRR STRFVSKMHF NRPKTTTSTR HTPAAEDALH
101: SLTAFSGADD ETTFQSLIST FEPTLRGSDD YTFLLRELGN RGECDKALLL YEFAVQRERR KNEQGKLASA MIGTLGRLGK VSIAKTVFES ALSGGYGNTV
201: YAFSALISAY GRSGLHNEAI TVFDSMKSYG LRPNLVTYNA VIDACGKGGM EFSKVAEFFD EMERNGVARS LFDEMANRKI EQDVFSFNTL LDAICKGGQM
301: DLSFDILAQM RANRITPNVV SYSTVIDGFA KAGRFDEALS LFDEMRHLGI ALDRVSYNTL LSIYTKAGRD EEALDVLREM ASVGIKKDVV TYNALLGGYG
401: KRGKYVEVKS VFDEMKRERA MEVFREFKSV GLRGDVVLYS ALIDALCKSG LVGSAVSLID EMTKEGISPN VVTYNSIIDA FGRSATMESR DGSLSTLTGT
501: EENRVIEIFE QLTTESSNRK KKECEEGVNE LFSMLEVIRK MHQLDIKPNV VTFSAILNAC SRCNSFEDAS VLLEELRVFD NQVYGVVHGL LMGRRENVWL
601: QARSLFDKLK EMDGSTASAF YNALTDMLWH FGQKRGAQLV ALEGRSRQVW ENVWSTSCLD LHLMSSGAAR AMVHAWLLNI RSVVFEGHEL PKVMSILTGW
701: GKHSKVVGDG ALRPAVEALL RGMNAPFYLS KCNMGRFTSS SSVVASWLRE SATLELLTLH DHLTTKANTT MRSRDQQGQD SLKLQPLLL

Best Arabidopsis Sequence Match ( AT2G31400.1 )
(BLAST)

001: MASTPPHWVT TTNNHRPWLP QRPRPGRSVT SAPPSSSASV SSAHLSQTTP NFSPLQTPKS DFSGRQSTRF VSPATNNHRQ TRQNPNYNHR PYGASSSPRG
101: SAPPPSSVAT VAPAQLSQPP NFSPLQTPKS DLSSDFSGRR STRFVSKMHF GRQKTTMATR HSSAAEDALQ NAIDFSGDDE MFHSLMLSFE SKLCGSDDCT
201: YIIRELGNRN ECDKAVGFYE FAVKRERRKN EQGKLASAMI STLGRYGKVT IAKRIFETAF AGGYGNTVYA FSALISAYGR SGLHEEAISV FNSMKEYGLR
301: PNLVTYNAVI DACGKGGMEF KQVAKFFDEM QRNGVQPDRI TFNSLLAVCS RGGLWEAARN LFDEMTNRRI EQDVFSYNTL LDAICKGGQM DLAFEILAQM
401: PVKRIMPNVV SYSTVIDGFA KAGRFDEALN LFGEMRYLGI ALDRVSYNTL LSIYTKVGRS EEALDILREM ASVGIKKDVV TYNALLGGYG KQGKYDEVKK
501: VFTEMKREHV LPNLLTYSTL IDGYSKGGLY KEAMEIFREF KSAGLRADVV LYSALIDALC KNGLVGSAVS LIDEMTKEGI SPNVVTYNSI IDAFGRSATM
601: DRSADYSNGG SLPFSSSALS ALTETEGNRV IQLFGQLTTE SNNRTTKDCE EGMQELSCIL EVFRKMHQLE IKPNVVTFSA ILNACSRCNS FEDASMLLEE
701: LRLFDNKVYG VVHGLLMGQR ENVWLQAQSL FDKVNEMDGS TASAFYNALT DMLWHFGQKR GAELVALEGR SRQVWENVWS DSCLDLHLMS SGAARAMVHA
801: WLLNIRSIVY EGHELPKVLS ILTGWGKHSK VVGDGALRRA VEVLLRGMDA PFHLSKCNMG RFTSSGSVVA TWLRESATLK LLILHDHITT ATATTTTMKS
901: TDQQQRKQTS FALQPLLL

Arabidopsis Description

GUN1Pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.