Factsheet for Os12t0562300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018247.1-P	Field mustard	nucleus	50.65	51.16
CDY15384	Canola	cytosol	55.23	39.67
GSMUA_Achr2P02090_001	Banana	cytosol	71.9	33.85
TraesCS5A01G085800.1	Wheat	plastid	88.24	31.47
Zm00001d030624_P001	Maize	plastid	88.89	31.26
EES16159	Sorghum	plastid	88.89	31.19
TraesCS5D01G097800.1	Wheat	plastid	87.25	31.19
TraesCS5B01G091600.1	Wheat	plastid	86.93	31.0
CDY19091	Canola	cytosol	54.9	23.05
PGSC0003DMT400018827	Potato	cytosol	55.88	22.62
Bra019526.1-P	Field mustard	cytosol	18.63	21.59
CDY56616	Canola	plastid	54.25	21.04
VIT_07s0005g01660.t01	Wine grape	plastid	58.17	20.53
Solyc06g009520.2.1	Tomato	nucleus, plastid	56.21	20.45
CDY10802	Canola	plastid	52.94	19.08
AT2G31400.1	Thale cress	plastid	54.9	18.3
KRH45156	Soybean	plastid	50.33	17.54
KRH01436	Soybean	plastid	49.35	17.26
Bra021733.1-P	Field mustard	cytosol	55.23	15.39
Os02t0750400-01	Rice	cytosol	6.21	8.96
Os06t0710800-01	Rice	cytosol	10.13	6.3
Os03t0824100-01	Rice	plastid	16.99	5.99
Os03t0115300-00	Rice	plastid	8.5	5.31
Os07t0548300-01	Rice	plastid	10.78	5.12
Os06t0172000-01	Rice	plastid	8.5	5.09
Os02t0170000-02	Rice	cytosol	7.52	4.9
Os07t0213300-01	Rice	cytosol	10.13	4.58
Os07t0590600-00	Rice	plastid	11.44	4.46
Os03t0309800-02	Rice	plastid	7.19	4.39
Os05t0275000-01	Rice	cytosol, plastid	11.11	4.29
Os08t0191900-01	Rice	plastid	6.21	3.12
HORVU5Hr1G022350.1	Barley	plastid	1.63	0.97
Bra018246.1-P	Field mustard	plastid	0.98	0.61

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.1370.110	MapMan:35.1	ProteinID:BAF30046.1	ProteinID:BAT17653.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os12g0562300	EnsemblPlants:Os12t0562300-01	PFAM:PF13812
PFscan:PS50828	PANTHER:PTHR24015	PANTHER:PTHR24015:SF366	InterPro:Pentatricopeptide_repeat	UniProt:Q0IML9	SMART:SM00463
SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000DD9F19	:

Description

Pentatricopeptide repeat domain containing protein. (Os12t0562300-01)

Coordinates

chr12:+:23042507..23045041

Molecular Weight (calculated)

34160.3 Da

IEP (calculated)

8.647

GRAVY (calculated)

0.104

Length

306 amino acids

Sequence
(BLAST)

001: AIIDAFGKSK VMMEDDSEVG DMGIVGVYGG QIVRVANPVS RGGRSATDVR MRRSQELFFI LELFQKMVQQ GVRPNVVTFS AILNACSRCN SFEDAALLLE
101: QLRLFDNFVY GVAYGLLVGS REVWSQAQSL FNQLGRMDSP TSSAFYNALT DVLWHFGQRR KAQQVVFEGI NRRVWENTWG EFCLDLHLMS CGAAQAMVHA
201: WLLNVRSIVF EGRAMPEFLS ILTGWGKHSR IAGASTLRRV IEALLNSIGA PFQVERFNIG RFVSPSAVVA AWLRESGTFN ILLLHDERVQ QAAPSNLVPR
301: LQALQL

Best Arabidopsis Sequence Match ( AT2G31400.1 )
(BLAST)

001: MASTPPHWVT TTNNHRPWLP QRPRPGRSVT SAPPSSSASV SSAHLSQTTP NFSPLQTPKS DFSGRQSTRF VSPATNNHRQ TRQNPNYNHR PYGASSSPRG
101: SAPPPSSVAT VAPAQLSQPP NFSPLQTPKS DLSSDFSGRR STRFVSKMHF GRQKTTMATR HSSAAEDALQ NAIDFSGDDE MFHSLMLSFE SKLCGSDDCT
201: YIIRELGNRN ECDKAVGFYE FAVKRERRKN EQGKLASAMI STLGRYGKVT IAKRIFETAF AGGYGNTVYA FSALISAYGR SGLHEEAISV FNSMKEYGLR
301: PNLVTYNAVI DACGKGGMEF KQVAKFFDEM QRNGVQPDRI TFNSLLAVCS RGGLWEAARN LFDEMTNRRI EQDVFSYNTL LDAICKGGQM DLAFEILAQM
401: PVKRIMPNVV SYSTVIDGFA KAGRFDEALN LFGEMRYLGI ALDRVSYNTL LSIYTKVGRS EEALDILREM ASVGIKKDVV TYNALLGGYG KQGKYDEVKK
501: VFTEMKREHV LPNLLTYSTL IDGYSKGGLY KEAMEIFREF KSAGLRADVV LYSALIDALC KNGLVGSAVS LIDEMTKEGI SPNVVTYNSI IDAFGRSATM
601: DRSADYSNGG SLPFSSSALS ALTETEGNRV IQLFGQLTTE SNNRTTKDCE EGMQELSCIL EVFRKMHQLE IKPNVVTFSA ILNACSRCNS FEDASMLLEE
701: LRLFDNKVYG VVHGLLMGQR ENVWLQAQSL FDKVNEMDGS TASAFYNALT DMLWHFGQKR GAELVALEGR SRQVWENVWS DSCLDLHLMS SGAARAMVHA
801: WLLNIRSIVY EGHELPKVLS ILTGWGKHSK VVGDGALRRA VEVLLRGMDA PFHLSKCNMG RFTSSGSVVA TWLRESATLK LLILHDHITT ATATTTTMKS
901: TDQQQRKQTS FALQPLLL

Arabidopsis Description

GUN1Pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.