CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15384	Canola	cytosol	58.16	99.53
CDY56616	Canola	plastid	77.64	71.74
CDY10802	Canola	plastid	81.48	69.96
AT2G31400.1	Thale cress	plastid	85.32	67.76
Bra021733.1-P	Field mustard	cytosol	99.86	66.3
PGSC0003DMT400018827	Potato	cytosol	63.37	61.11
VIT_07s0005g01660.t01	Wine grape	plastid	72.02	60.55
Os12t0562300-01	Rice	cytosol	23.05	54.9
Solyc06g009520.2.1	Tomato	nucleus, plastid	62.83	54.46
GSMUA_Achr2P02090_001	Banana	cytosol	47.46	53.23
KRH45156	Soybean	plastid	51.03	42.37
TraesCS5B01G091600.1	Wheat	plastid	49.79	42.31
TraesCS5A01G085800.1	Wheat	plastid	49.79	42.31
TraesCS5D01G097800.1	Wheat	plastid	49.66	42.29
KRH01436	Soybean	plastid	50.21	41.83
Zm00001d030624_P001	Maize	plastid	49.66	41.61
EES16159	Sorghum	plastid	49.11	41.05
HORVU5Hr1G022350.1	Barley	plastid	23.46	33.27
CDX71198	Canola	cytosol	16.74	21.55
CDX73117	Canola	plastid	23.32	19.7
CDY45398	Canola	plastid	23.05	19.44
CDX78150	Canola	plastid	12.76	19.18
CDY32056	Canola	plastid	21.12	19.04
CDY31603	Canola	plastid	17.28	19.0
CDX73576	Canola	plastid	12.48	18.24
CDY41990	Canola	plastid	11.66	18.05
CDX71562	Canola	mitochondrion, plastid	17.28	18.03
CDY29249	Canola	plastid	20.16	17.99
CDY56509	Canola	plastid	20.16	17.97
CDY23832	Canola	plastid	20.03	17.85
CDY06027	Canola	plastid	12.89	17.7
CDY42639	Canola	plastid	11.66	17.6
CDX79920	Canola	cytosol, plastid	19.34	17.26
CDX71917	Canola	plastid	12.89	17.25
CDX86283	Canola	plastid	11.66	16.73
CDX85360	Canola	plastid	11.52	16.63
CDY31666	Canola	cytosol	13.85	16.21
CDX84260	Canola	cytosol, nucleus, plastid	13.85	15.71
CDX98345	Canola	cytosol	6.58	15.43
CDY64953	Canola	cytosol	6.04	15.12
CDY24692	Canola	plastid	9.88	15.0
CDY05264	Canola	plastid	10.01	14.9
CDX74617	Canola	mitochondrion	6.45	13.39
CDY52317	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.1370.110	MapMan:35.1	UniProt:A0A078G1D6	EnsemblPlants:CDY19091	ProteinID:CDY19091
ProteinID:CDY19091.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00006367001	InterPro:IPR002625
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01713	PFAM:PF13041	PFAM:PF13812	PFscan:PS50828
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF366	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443
InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE48FD	SEG:seg

Description

BnaA04g18310DBnaA04g18310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1D6]

Coordinates

chrLK032092:+:206158..209355

Molecular Weight (calculated)

80814.5 Da

IEP (calculated)

7.545

GRAVY (calculated)

-0.101

Length

729 amino acids

Sequence
(BLAST)

001: MHFGRPKTTT SSSRHSSAAE EALRTAITFS GEDQTFQSLI SSFELRGSDD YTFILRELGN RGECDKAVTF YEFAVLRERR KIEQGKLASA MIGTLGRLGK
101: VSIAKRVFEE ALSGGGLHEE AISVFTSMKS YNLRPNLVTY NAVIDACGKG GMEFKQVAEF LYEMQRNNVQ PDRITFNSLL AVCSRGGLWE AARNLFDEMS
201: KRGIEQDVFT YNTLLDAICK GGKMDMAFEI LSQMPSKRIM PNVVSYSAVI DGFAKAGRFD EALGLFDEMK YLGIALDRVS YNTLLSIYTK LGRSKEALDV
301: LREMASVGIK KDVVTYNALL GGYGKQRNYL EVKNVFAEMK RERVTPNLLT YSTLIDVYSK GGLYKEAMEI FKEFKGAGLR ADVVLYSALI DALCKNGLVG
401: SAVSLIDEMT KEGISPNVVT YNSIIDAFGR SATVECLAES GDGGVMQIFG KLTIESSNRG KKDCKEGMHE LSSILEVIRK MHQLEIKPNV VTFSAILNAC
501: SRCNSFEDAS VLLEELRLFD NQVYGVVHGL LKGHRENVWL QAQSLFDKVN EMDGSTAAAF YNALTDMLWH FGQKRGAQLV ALEGRSRQVW ENVWSESCLD
601: LHLMSSGAAR AMVHAWLLNI RSIVYEGHEL PKLLSILTGW GKHSKVVGDA ALRPAVEALL RGMDAPFYLS KCNMGRFTSS GSVVATWLRE SATLKLLIVH
701: DHVTTKASTT RGPAEQHEQT SLTLQPLLL

Best Arabidopsis Sequence Match ( AT2G31400.1 )
(BLAST)

001: MASTPPHWVT TTNNHRPWLP QRPRPGRSVT SAPPSSSASV SSAHLSQTTP NFSPLQTPKS DFSGRQSTRF VSPATNNHRQ TRQNPNYNHR PYGASSSPRG
101: SAPPPSSVAT VAPAQLSQPP NFSPLQTPKS DLSSDFSGRR STRFVSKMHF GRQKTTMATR HSSAAEDALQ NAIDFSGDDE MFHSLMLSFE SKLCGSDDCT
201: YIIRELGNRN ECDKAVGFYE FAVKRERRKN EQGKLASAMI STLGRYGKVT IAKRIFETAF AGGYGNTVYA FSALISAYGR SGLHEEAISV FNSMKEYGLR
301: PNLVTYNAVI DACGKGGMEF KQVAKFFDEM QRNGVQPDRI TFNSLLAVCS RGGLWEAARN LFDEMTNRRI EQDVFSYNTL LDAICKGGQM DLAFEILAQM
401: PVKRIMPNVV SYSTVIDGFA KAGRFDEALN LFGEMRYLGI ALDRVSYNTL LSIYTKVGRS EEALDILREM ASVGIKKDVV TYNALLGGYG KQGKYDEVKK
501: VFTEMKREHV LPNLLTYSTL IDGYSKGGLY KEAMEIFREF KSAGLRADVV LYSALIDALC KNGLVGSAVS LIDEMTKEGI SPNVVTYNSI IDAFGRSATM
601: DRSADYSNGG SLPFSSSALS ALTETEGNRV IQLFGQLTTE SNNRTTKDCE EGMQELSCIL EVFRKMHQLE IKPNVVTFSA ILNACSRCNS FEDASMLLEE
701: LRLFDNKVYG VVHGLLMGQR ENVWLQAQSL FDKVNEMDGS TASAFYNALT DMLWHFGQKR GAELVALEGR SRQVWENVWS DSCLDLHLMS SGAARAMVHA
801: WLLNIRSIVY EGHELPKVLS ILTGWGKHSK VVGDGALRRA VEVLLRGMDA PFHLSKCNMG RFTSSGSVVA TWLRESATLK LLILHDHITT ATATTTTMKS
901: TDQQQRKQTS FALQPLLL

Arabidopsis Description

GUN1Pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.