Factsheet for PGSC0003DMT400018827

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g009520.2.1	Tomato	nucleus, plastid	97.62	87.75
VIT_07s0005g01660.t01	Wine grape	plastid	74.34	64.82
CDY15384	Canola	cytosol	36.38	64.55
CDY19091	Canola	cytosol	61.11	63.37
Bra018247.1-P	Field mustard	nucleus	24.74	61.72
CDY56616	Canola	plastid	58.73	56.27
GSMUA_Achr2P02090_001	Banana	cytosol	48.15	56.0
Os12t0562300-01	Rice	cytosol	22.62	55.88
CDY10802	Canola	plastid	62.57	55.71
Bra019526.1-P	Field mustard	cytosol	19.31	55.3
AT2G31400.1	Thale cress	plastid	63.36	52.18
Bra018246.1-P	Field mustard	plastid	32.41	49.6
KRH01436	Soybean	plastid	51.98	44.91
KRH45156	Soybean	plastid	52.12	44.87
TraesCS5A01G085800.1	Wheat	plastid	50.4	44.41
TraesCS5D01G097800.1	Wheat	plastid	50.26	44.39
TraesCS5B01G091600.1	Wheat	plastid	50.26	44.29
EES16159	Sorghum	plastid	50.93	44.15
Zm00001d030624_P001	Maize	plastid	50.79	44.14
Bra021733.1-P	Field mustard	cytosol	63.36	43.62
HORVU5Hr1G022350.1	Barley	plastid	24.21	35.6
PGSC0003DMT400063174	Potato	plastid	24.21	21.28
PGSC0003DMT400033331	Potato	plastid	13.23	20.96
PGSC0003DMT400066525	Potato	plastid	22.22	20.41
PGSC0003DMT400027006	Potato	cytosol, plastid	14.95	19.62
PGSC0003DMT400008123	Potato	cytosol, plastid	11.51	18.95
PGSC0003DMT400030453	Potato	mitochondrion	16.53	17.93
PGSC0003DMT400082022	Potato	plastid	11.51	17.83
PGSC0003DMT400010473	Potato	plastid	19.31	17.34
PGSC0003DMT400041148	Potato	plastid	11.77	15.56
PGSC0003DMT400022191	Potato	plastid	9.92	14.97
PGSC0003DMT400060882	Potato	mitochondrion	10.58	14.71
PGSC0003DMT400011734	Potato	plastid	9.52	14.55

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0010019	GO:GO:0031930	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:M1AB72
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	EnsemblPlantsGene:PGSC0003DMG402007298	PGSC:PGSC0003DMG402007298
EnsemblPlants:PGSC0003DMT400018827	InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF366
InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002968277	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402007298]

Coordinates

chr6:+:257068..261294

Molecular Weight (calculated)

83531.3 Da

IEP (calculated)

6.454

GRAVY (calculated)

-0.066

Length

756 amino acids

Sequence
(BLAST)

001: MHFGRAKISG NGRHSSFAEE ALEEAIRCCK NEAGLDQVLL TFGSKLLGSD DYTFLFRELG NRGEWLAAMR CFEFAVGRER KRNEQGKLAS SMISILGRSG
101: KVDLAEKVFE NAVSDGYGNT VYAYSALISA YAKSGYCNEA IRVFETMKDS GLKPNLVTYN ALIDACGKGG ADFKRASEIF DEMLRNGVQP DRITFNSLLA
201: VCSGAGLWET ARGLFNEMIY RGIDQDIYTY NTFLDAACNG GQIDVAFDIM SEMHAKNILP NQVTYSTVIR GCAKAGRLDR ALSLFNEMKC AGITLDRVSY
301: NTLLAIYASL GKFEEALNVS KEMESMGIKK DVVTYNALLD GFGKQGMYIK VKQLFAEMKA EKLSPNLLTY STLISVYLKG ALYHDAVEVY KEFKKQGLKA
401: DVVFYSKLID ALCKKGLVEY SSLLLNEMTK EGIQPNVVTY NSIINAFGES ASNECGSDNV TQIVSTISQS KWENTEEDNI VKIFEQLAAQ KSASGKKTNA
501: ERQDILCILG VFHKMHELQI KPNVVTFSAI LNACSRCSSF DEASLLLEEL RIFDNQVYGV AHGLLMGQRE GVWAQALSLF NEVKQMDSST ASAFYNALTD
601: MLWHFDQKQG AQLVVLEGKR SEVWENTWST SCLDLHLMSS GAACAMVHAW LLSIRSIVFE GHELPKMLSI LTGWGKHSKI TGDGALKRAI EGLLTSIGAP
701: FQVAKCNIGR FISTGAVVTA WLRESGTLEV LVLQDDTSHL RATRFGQISN LQQLTL

Best Arabidopsis Sequence Match ( AT2G31400.1 )
(BLAST)

001: MASTPPHWVT TTNNHRPWLP QRPRPGRSVT SAPPSSSASV SSAHLSQTTP NFSPLQTPKS DFSGRQSTRF VSPATNNHRQ TRQNPNYNHR PYGASSSPRG
101: SAPPPSSVAT VAPAQLSQPP NFSPLQTPKS DLSSDFSGRR STRFVSKMHF GRQKTTMATR HSSAAEDALQ NAIDFSGDDE MFHSLMLSFE SKLCGSDDCT
201: YIIRELGNRN ECDKAVGFYE FAVKRERRKN EQGKLASAMI STLGRYGKVT IAKRIFETAF AGGYGNTVYA FSALISAYGR SGLHEEAISV FNSMKEYGLR
301: PNLVTYNAVI DACGKGGMEF KQVAKFFDEM QRNGVQPDRI TFNSLLAVCS RGGLWEAARN LFDEMTNRRI EQDVFSYNTL LDAICKGGQM DLAFEILAQM
401: PVKRIMPNVV SYSTVIDGFA KAGRFDEALN LFGEMRYLGI ALDRVSYNTL LSIYTKVGRS EEALDILREM ASVGIKKDVV TYNALLGGYG KQGKYDEVKK
501: VFTEMKREHV LPNLLTYSTL IDGYSKGGLY KEAMEIFREF KSAGLRADVV LYSALIDALC KNGLVGSAVS LIDEMTKEGI SPNVVTYNSI IDAFGRSATM
601: DRSADYSNGG SLPFSSSALS ALTETEGNRV IQLFGQLTTE SNNRTTKDCE EGMQELSCIL EVFRKMHQLE IKPNVVTFSA ILNACSRCNS FEDASMLLEE
701: LRLFDNKVYG VVHGLLMGQR ENVWLQAQSL FDKVNEMDGS TASAFYNALT DMLWHFGQKR GAELVALEGR SRQVWENVWS DSCLDLHLMS SGAARAMVHA
801: WLLNIRSIVY EGHELPKVLS ILTGWGKHSK VVGDGALRRA VEVLLRGMDA PFHLSKCNMG RFTSSGSVVA TWLRESATLK LLILHDHITT ATATTTTMKS
901: TDQQQRKQTS FALQPLLL

Arabidopsis Description

GUN1Pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.