Factsheet for PGSC0003DMT400082022

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006500.2.1	Tomato	plastid	97.54	97.54
VIT_07s0005g06720.t01	Wine grape	cytosol	61.27	75.51
CDX86283	Canola	plastid	69.26	66.54
CDX85360	Canola	plastid	68.65	66.34
GSMUA_Achr1P15160_001	Banana	plastid	65.57	65.17
AT5G48730.1	Thale cress	plastid	67.21	64.57
KRH46714	Soybean	plastid	67.83	64.27
Bra037464.1-P	Field mustard	plastid	69.06	62.99
EER87934	Sorghum	plastid	60.66	60.16
Zm00001d037476_P001	Maize	plastid	60.25	59.76
HORVU7Hr1G027800.8	Barley	cytosol	59.02	59.38
Os06t0172000-01	Rice	plastid	61.07	58.32
TraesCS7A01G133100.1	Wheat	plastid	60.04	57.68
TraesCS7B01G033900.1	Wheat	plastid	59.84	57.59
PGSC0003DMT400008123	Potato	cytosol, plastid	39.96	42.48
PGSC0003DMT400011734	Potato	plastid	36.48	35.96
PGSC0003DMT400022191	Potato	plastid	36.27	35.33
PGSC0003DMT400033331	Potato	plastid	22.13	22.64
PGSC0003DMT400041148	Potato	plastid	21.31	18.18
PGSC0003DMT400027006	Potato	cytosol, plastid	19.26	16.32
PGSC0003DMT400030453	Potato	mitochondrion	20.7	14.49
PGSC0003DMT400060882	Potato	mitochondrion	15.16	13.6
PGSC0003DMT400066525	Potato	plastid	22.13	13.12
PGSC0003DMT400010473	Potato	plastid	21.72	12.59
PGSC0003DMT400018827	Potato	cytosol	17.83	11.51
PGSC0003DMT400063174	Potato	plastid	20.08	11.4

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102594466	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:M1D5H6	PFAM:PF01535	PFAM:PF13041
EnsemblPlantsGene:PGSC0003DMG400032206	PGSC:PGSC0003DMG400032206	EnsemblPlants:PGSC0003DMT400082022	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF664
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002969F8D	RefSeq:XP_006354206.1	SEG:seg

Description

Pentatricopeptide repeat-containing protein, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400032206]

Coordinates

chr1:-:2084195..2089035

Molecular Weight (calculated)

55670.1 Da

IEP (calculated)

9.110

GRAVY (calculated)

-0.275

Length

488 amino acids

Sequence
(BLAST)

001: MASFFGPSNP IPPSSFGPPR TDPLTCRNDP LTYRKVSVPR SKPDSSSMEV EKLKVKEAKE RKEETNKKIA SQKAVSIILR REAAKAVIEY KKKKGNSKKL
101: LPRTVLEALH ERITALRWES ALKVFELLQE QLWYRPNPGI YIKLIVMLGK CKEPEKAQSL FEMMVEEGCV VNQEAYTALL SAYSRSGRFH EAFSILEEMK
201: NIPNCLPDVF TYSILIKSCL QVYDFDKVQI LLSDMECMGI KANTVTYNTL IDSYGKAKRF KEMESTLVEM LRRRDCKPDV WTMNSTLRAF GGSGQIEMME
301: KCYEKFQSAG IEPSIKTFNI LLDSYGKTEN YEKMGAVMEF MQKYYFSWTI VTYNIVIDAF GRAGDLKQME FLFRLMQSER IKPNCVTLCS LVRAYGKAGK
401: AEKLGAVLRF IENSDVALDT VFFNCLVDAY GMMGCFTELK GVLEMMEQSG CKPDKITYRS MIKAYSINGM TNKASELRNL LASLEKAR

Best Arabidopsis Sequence Match ( AT5G48730.1 )
(BLAST)

001: MVSLSTSTSH APPLPTNRRT AERTFTVRCI SISPREPNYA ITSDKSNNTS LSLRETRQSK WLINAEDVNE RDSKEIKEDK NTKIASRKAI SIILRREATK
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.