Factsheet for PGSC0003DMT400010473

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g017760.1.1	Tomato	plastid	97.74	97.74
VIT_11s0052g00600.t01	Wine grape	plastid	69.48	71.25
AT2G18940.1	Thale cress	plastid	63.66	65.21
Bra024454.1-P	Field mustard	plastid	61.88	63.77
CDY29249	Canola	plastid	61.76	63.65
KRH12254	Soybean	plastid	62.59	63.57
CDY56509	Canola	plastid	61.52	63.33
KRH37281	Soybean	plastid	61.88	62.77
GSMUA_Achr2P04910_001	Banana	plastid	57.72	58.34
KXG20531	Sorghum	plastid	49.17	53.35
Zm00001d036698_P001	Maize	plastid	48.93	52.42
Os05t0275000-01	Rice	cytosol, plastid	48.81	51.83
TraesCS7B01G401800.2	Wheat	plastid	47.98	49.57
TraesCS7A01G495500.1	Wheat	plastid	47.74	49.57
TraesCS7D01G482800.1	Wheat	plastid	47.86	49.51
HORVU7Hr1G111000.5	Barley	plastid	43.71	45.1
PGSC0003DMT400066525	Potato	plastid	35.39	36.21
PGSC0003DMT400008123	Potato	cytosol, plastid	12.59	23.09
PGSC0003DMT400027006	Potato	cytosol, plastid	15.08	22.05
PGSC0003DMT400082022	Potato	plastid	12.59	21.72
PGSC0003DMT400030453	Potato	mitochondrion	17.93	21.66
PGSC0003DMT400022191	Potato	plastid	12.71	21.36
PGSC0003DMT400033331	Potato	plastid	11.64	20.55
PGSC0003DMT400011734	Potato	plastid	12.0	20.4
PGSC0003DMT400063174	Potato	plastid	19.83	19.42
PGSC0003DMT400018827	Potato	cytosol	17.34	19.31
PGSC0003DMT400060882	Potato	mitochondrion	12.23	18.93
PGSC0003DMT400041148	Potato	plastid	12.11	17.83

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102582941	MapMan:16.12.4.3	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M0ZY45	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFAM:PF13812	EnsemblPlantsGene:PGSC0003DMG400004093	PGSC:PGSC0003DMG400004093	EnsemblPlants:PGSC0003DMT400010473	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF343	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000295CDD0
RefSeq:XP_006344540.1	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004093]

Coordinates

chr7:-:10653367..10656366

Molecular Weight (calculated)

95425.2 Da

IEP (calculated)

7.013

GRAVY (calculated)

-0.232

Length

842 amino acids

Sequence
(BLAST)

001: MEGSLFPNRP ILPIQSTKPT PLPPTQRLKL NPTTTSSPLP PLKQQQQQTP SSSTSTSFPL DSLLQHLLHV SSSNPPRTVK SSRISNTHLS SLPVSLENDD
101: TLFGNTRVTV PKMESFDDGS LEFLPLNCKL LIDSILERPL SHLTEFFDSV KFELLEVDLM SLLKGLDVIG KWDRAILLFE WVVLNIHVEN EKLDSQVIEF
201: MVKVLGRESQ HLVTSKLFDV IPFEDYSLDV RAWTTVLHAY SRIGKYDKAI ALFEYVKEKG LSATLVTYNV MLDVYGKKGR SWNNILLLLD VMTSNGLEFD
301: EFTCSTVIAA CGREGLLEEA KEFFDGLKRK GYVPGTVTYN SLLQVFGKAG IYSEALRVLK EMEENNCPPD SVTYNELVAA YVRAGFLEEG AALIGTMTHK
401: GVMPNAITYT TVIDAYGKAG KEDKALSFFK QMKQAGCVPN VCTYNAIIGM LGKKSRVEEM MDVISDMKLN GCAPNRITWN TMLAMCGNRG MQKYVNHVFH
501: EMKNCGFEPD RDTFNTLIRA YGRCDSDFNA AKMYDEMIQA GFTPCVTTYN ALLNALARRG DWRAAESVFS DMKSKGFKPS ETTYSLMLHC YSKGGNVRGV
601: ERIAKEIYDG HIFPSWMLLR TLILANFKCR SLMGMERAFQ ELQKNGYRPD LVIFNSMLSI FARNKLYDRA HDVLHLIREN GLQPDLVTYN SLMDMYARAG
701: ECWKAEEILN RLQKNGGNPD LVSYNTVIKA FCRQGRMEEA IRIFSQMTEK GIRPCIVTYN TFIAGFAARG MFSEVNELIS YMIQHECRPN ELTYKTIVDG
801: YCKAKRYQDA MDFVLNIKEK DNTFDEESLQ RFASRVRENM ES

Best Arabidopsis Sequence Match ( AT2G18940.1 )
(BLAST)

001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.