CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29249	Canola	plastid	97.8	97.92
AT2G18940.1	Thale cress	plastid	87.78	87.35
VIT_11s0052g00600.t01	Wine grape	plastid	65.28	65.04
PGSC0003DMT400010473	Potato	plastid	63.33	61.52
Solyc07g017760.1.1	Tomato	plastid	63.2	61.4
KRH12254	Soybean	plastid	61.0	60.19
KRH37281	Soybean	plastid	60.51	59.64
GSMUA_Achr2P04910_001	Banana	plastid	57.21	56.18
KXG20531	Sorghum	plastid	50.73	53.48
Zm00001d036698_P001	Maize	plastid	50.86	52.93
Os05t0275000-01	Rice	cytosol, plastid	50.49	52.08
TraesCS7D01G482800.1	Wheat	plastid	50.49	50.74
TraesCS7A01G495500.1	Wheat	plastid	49.76	50.19
TraesCS7B01G401800.2	Wheat	plastid	49.76	49.94
HORVU7Hr1G111000.5	Barley	plastid	44.5	44.61
CDX71198	Canola	cytosol	28.85	41.7
CDY32056	Canola	plastid	36.43	36.84
CDY31603	Canola	plastid	18.95	23.38
CDX71562	Canola	mitochondrion, plastid	19.32	22.6
CDX86283	Canola	plastid	13.69	22.05
CDX85360	Canola	plastid	13.57	21.98
CDX78150	Canola	plastid	12.35	20.82
CDY41990	Canola	plastid	11.98	20.81
CDY42639	Canola	plastid	12.1	20.5
CDY19091	Canola	cytosol	17.97	20.16
CDY31666	Canola	cytosol	15.28	20.06
CDX73576	Canola	plastid	12.22	20.04
CDY06027	Canola	plastid	12.96	19.96
CDY64953	Canola	cytosol	7.09	19.93
CDY24692	Canola	plastid	11.61	19.79
CDY05264	Canola	plastid	11.74	19.59
CDX73117	Canola	plastid	20.54	19.47
CDY45398	Canola	plastid	20.54	19.44
CDX71917	Canola	plastid	12.84	19.27
CDX84260	Canola	cytosol, nucleus, plastid	15.04	19.13
CDX74617	Canola	mitochondrion	8.19	19.09
CDX79920	Canola	cytosol, plastid	18.83	18.85
CDY56616	Canola	plastid	18.09	18.76
CDY10802	Canola	plastid	19.44	18.73
CDY23832	Canola	plastid	18.58	18.58
CDX98345	Canola	cytosol	6.97	18.33
CDY15384	Canola	cytosol	8.8	16.9
CDY52317	Canola	cytosol	0.12	5.88

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.3	UniProt:A0A078J0E4	EnsemblPlants:CDY56509	ProteinID:CDY56509	ProteinID:CDY56509.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00019693001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF343	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EC1FAF
SEG:seg	:	:	:	:	:

Description

BnaCnng30520DBnaCnng30520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0E4]

Coordinates

chrLK033495:-:10608..13064

Molecular Weight (calculated)

91718.2 Da

IEP (calculated)

8.534

GRAVY (calculated)

-0.192

Length

818 amino acids

Sequence
(BLAST)

001: MDAALSPLKP PYPIQSKRPP PPQSSNHSVK FSSATLHLPP PSPSPPSFPL DSLLHHLVHL SSFPRHANSP AAARFPSLEV KSAKPISSPV LGINGSLKLL
101: CKKETALLNS ILDHPLSELS SFFDSAKSEL IRTDVFSLVK ALDDSGNWER AVLLFEWLVS ASNSGDLKLD HYVIEIVVRI LGRESQYSVA AKLLDKIPLQ
201: EYTLDVRAYT TILYAYSRTG KYERAVNLFE RMKEMGPSPT LVTYNVILDA FGRMGRSWGK IVLVLDVIRS KGMKFDEFTC STVLSACARE GLLREAKEFF
301: AEIKSSGYEP GTVTYNALLQ VYGKAGVYTE ALKILKEMEE NDCPADSVTY NELVAAYVRA GFTKEAAGVI EMMTGKGVMP NAITYTTVID AYGKSGKEEE
401: ALKLFYSMKR AGCVPNTCTY NVVLSMLGKK SRSNEMVKML CDMKSNGCSP NRVTWNTMLA LCGKKGMDKY VNRVFREMKS CGFEPDRDTF NTLISAYGRC
501: GSEVDASKMF GEMTRAGFNA CVTTYNALLN ALARQGDWRS GEGVISDMKS KGFKPTETSY SLMLQCYAKG GNVLGIERIE KEIVEGQIFP SWMLLRTLLL
601: ANFKCRALAG MERAFALFKK HGYKPDMVIF NSMLSIFTRN NMYDQAHEIL QSIRDHELNP DLVTYNSLMD MYVRRGECWK AEEILKSLEK SKLRPDLVSY
701: NTVIKGFCRK GLMQEAVRML SEMTERGIRP CIFTYNTFVS GYTAMGMFGE IEDVIECMAK NKCRPNELTY KMVVDGYCRG GRYSEAMEFV SKIKTLDAYF
801: DDQSIQRLAV RVRENLES

Best Arabidopsis Sequence Match ( AT2G18940.1 )
(BLAST)

001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.