Factsheet for HORVU7Hr1G111000.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G401800.2	Wheat	plastid	80.39	80.49
TraesCS7A01G495500.1	Wheat	plastid	79.78	80.27
TraesCS7D01G482800.1	Wheat	plastid	80.02	80.22
KXG20531	Sorghum	plastid	68.01	71.52
Os05t0275000-01	Rice	cytosol, plastid	68.63	70.62
Zm00001d036698_P001	Maize	plastid	67.77	70.36
GSMUA_Achr2P04910_001	Banana	plastid	48.28	47.3
VIT_11s0052g00600.t01	Wine grape	plastid	46.45	46.16
CDY29249	Canola	plastid	44.85	44.8
Bra024454.1-P	Field mustard	plastid	44.73	44.68
CDY56509	Canola	plastid	44.61	44.5
AT2G18940.1	Thale cress	plastid	44.73	44.4
Solyc07g017760.1.1	Tomato	plastid	45.71	44.3
PGSC0003DMT400010473	Potato	plastid	45.1	43.71
KRH12254	Soybean	plastid	43.38	42.7
KRH37281	Soybean	plastid	43.14	42.41
HORVU2Hr1G035060.2	Barley	cytosol	27.82	36.32
HORVU7Hr1G027800.8	Barley	cytosol	16.91	28.45
HORVU2Hr1G043170.1	Barley	mitochondrion	18.63	23.0
HORVU0Hr1G007320.4	Barley	cytosol	12.99	22.99
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	12.99	20.78
HORVU4Hr1G086600.3	Barley	plastid	12.13	19.96
HORVU2Hr1G056820.1	Barley	plastid	19.12	19.05
HORVU6Hr1G075250.5	Barley	plastid	11.15	18.2
HORVU5Hr1G114630.1	Barley	mitochondrion	18.38	18.01
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	12.5	17.65
HORVU5Hr1G022350.1	Barley	plastid	10.91	17.32
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	13.36	16.9
HORVU3Hr1G114340.4	Barley	mitochondrion	12.87	16.56

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.3	UniProt:A0A287XTR6	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU7Hr1G111000	EnsemblPlants:HORVU7Hr1G111000.5
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF343	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B476542	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:632230286..632264517

Molecular Weight (calculated)

77220.3 Da

IEP (calculated)

8.794

GRAVY (calculated)

-0.196

Length

816 amino acids

Sequence
(BLAST)

001: QLTATHPAAP AMEATGRGVF QNKPTRPPGP KKRPPPSXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXGPAP FEMVVRALGR EGRHDAVCAL LDEMPLPPGA RLDVRAYTTV
201: LHALSREGRY DRALRLFDEL RREGVAPTRV TYNVVLDVYG RMGRSWPRVV ALLADMRAAG VEPDGFTAST VIAAAGRDGL VDEAVAFFED LKARGHAPCV
301: VTYNALLQVF GKAGNYTEAL RVLREMEDAG CKPDAVTYNE LAGSYARAGF YQEAAKCIDT MIGKGLLPNT FTYNTIMTAY GNAGKVDEAL ALFDRMKKNG
401: FVPYTNTYNL VLGMLGKKSR FAAMLEMLGE MSRSGCTPNR VTWNTLLAVC GKRGMESYVT RVLEGMKSCK VELCRDTYNT LICAYGRCGS RANAFKMYDE
501: MTAAGFAPCL TTYNALLNVL SRQGDWTAAR SIVSKMKSEG FKPNDMSYSL LLQCHAKGGN AAGIEAIEKE VYQGNIFPSW VILRTLVIAN FKCRRLEGIE
601: RAFQEVKARG HKPDLVILNS MLSIYAKNGL YSKAMEMFES IEQSGLSPDL ITYNSLMDMY AKSNEPWEAE KILNRLRSSQ SQQQQQQQQL KPDVVSYNTV
701: INGFCKEGLI KEAQRVLSEM IADGVAPCVI TYHTLVGGYA SREMFAEARE VVGYMIQRKL KPMELTYRRV VDSYCRAKRY EDARDFLAVV AEADTNSDEK
801: LLGALTARIE SAQFGR

Best Arabidopsis Sequence Match ( AT2G18940.1 )
(BLAST)

001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.