Factsheet for HORVU7Hr1G027800.8

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G033900.1	Wheat	plastid	89.9	86.0
TraesCS7A01G133100.1	Wheat	plastid	89.48	85.43
EER87934	Sorghum	plastid	79.18	78.05
Zm00001d037476_P001	Maize	plastid	78.97	77.85
Os06t0172000-01	Rice	plastid	81.03	76.91
VIT_07s0005g06720.t01	Wine grape	cytosol	55.46	67.93
GSMUA_Achr1P15160_001	Banana	plastid	65.36	64.56
PGSC0003DMT400082022	Potato	plastid	59.38	59.02
Solyc01g006500.2.1	Tomato	plastid	58.97	58.61
KRH46714	Soybean	plastid	61.24	57.67
AT5G48730.1	Thale cress	plastid	60.0	57.28
CDX85360	Canola	plastid	59.38	57.03
CDX86283	Canola	plastid	59.59	56.89
Bra037464.1-P	Field mustard	plastid	59.59	54.02
HORVU4Hr1G086600.3	Barley	plastid	36.29	35.48
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	35.05	29.41
HORVU6Hr1G075250.5	Barley	plastid	20.41	19.8
HORVU2Hr1G035060.2	Barley	cytosol	23.92	18.56
HORVU0Hr1G007320.4	Barley	cytosol	16.91	17.79
HORVU7Hr1G111000.5	Barley	plastid	28.45	16.91
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	16.91	16.08
HORVU3Hr1G114340.4	Barley	mitochondrion	20.21	15.46
HORVU2Hr1G043170.1	Barley	mitochondrion	18.56	13.62
HORVU5Hr1G114630.1	Barley	mitochondrion	22.27	12.97
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	17.11	12.87
HORVU2Hr1G056820.1	Barley	plastid	17.73	10.5
HORVU5Hr1G022350.1	Barley	plastid	10.52	9.92

Protein Annotations

EnsemblPlants:HORVU7Hr1G027800.8	EnsemblPlantsGene:HORVU7Hr1G027800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF664	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI000B480A6B	UniProt:A0A287VU74	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:49747180..49749209

Molecular Weight (calculated)

51437.4 Da

IEP (calculated)

8.615

GRAVY (calculated)

-0.309

Length

485 amino acids

Sequence
(BLAST)

001: LSRDQSHDLV XXXXAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA EEFERQRKEE VNRKIASRKA LSIILRREAT KAVLDKREPG KGTRRLLPRT
101: VLEALHDRVA ALRWESALKV FELMRDQVWY RPYVGIYIKL ITMLGKCKQP GKAHELFQAM IDEGCAPNLE SYTALVSAYS RSGSFDRAFS LLDQMKATPG
201: CRPDVQTYSI LIKSCLHAYD FDKVKHLLED MARAGIRPNT VTYNTLIDAH GKAGRFAEME STLLEMLSED CKPDVWTMNS TLRAFGSSGQ IETMESCYEK
301: FQASGISPNI KTYNILLDSY GKAKMYEKMG AVMEYMQKYY YSWTIVTYNV VIDAFGRAGD LEQMEYIFRL MKSDRIKPNC VTLCSLIRAY GRADQVKKIE
401: TVLRVIENSD ITLDIVFFNC LVDAYGRVGR LAEMWDVLNM MKEEQIRPDK VTCTTMIKWF LVKGIDDHRV QYLRDLKDGR STDNK

Best Arabidopsis Sequence Match ( AT5G48730.1 )
(BLAST)

001: MVSLSTSTSH APPLPTNRRT AERTFTVRCI SISPREPNYA ITSDKSNNTS LSLRETRQSK WLINAEDVNE RDSKEIKEDK NTKIASRKAI SIILRREATK
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.