Factsheet for Solyc01g006500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082022	Potato	plastid	97.54	97.54
VIT_07s0005g06720.t01	Wine grape	cytosol	61.07	75.25
CDX86283	Canola	plastid	69.06	66.34
CDX85360	Canola	plastid	68.65	66.34
GSMUA_Achr1P15160_001	Banana	plastid	64.96	64.56
AT5G48730.1	Thale cress	plastid	67.01	64.37
KRH46714	Soybean	plastid	67.42	63.88
Bra037464.1-P	Field mustard	plastid	68.85	62.8
EER87934	Sorghum	plastid	60.04	59.55
Zm00001d037476_P001	Maize	plastid	59.63	59.15
HORVU7Hr1G027800.8	Barley	cytosol	58.61	58.97
Os06t0172000-01	Rice	plastid	60.45	57.73
TraesCS7B01G033900.1	Wheat	plastid	59.84	57.59
TraesCS7A01G133100.1	Wheat	plastid	59.84	57.48
Solyc08g045780.2.1	Tomato	cytosol	39.34	41.74
Solyc01g057200.2.1	Tomato	plastid	35.86	37.23
Solyc12g098990.1.1	Tomato	plastid	36.89	36.36
Solyc04g054270.2.1	Tomato	plastid	21.93	22.38
Solyc07g043600.2.1	Tomato	nucleus	21.72	18.28
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	19.06	14.93
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	11.48	14.7
Solyc08g045850.2.1	Tomato	nucleus	20.08	14.02
Solyc01g107320.2.1	Tomato	plastid	22.34	13.31
Solyc07g017760.1.1	Tomato	plastid	22.34	12.95
Solyc03g113630.2.1	Tomato	nucleus	19.88	11.28
Solyc06g009520.2.1	Tomato	nucleus, plastid	18.65	10.82
Solyc04g015950.1.1	Tomato	plastid	18.03	10.35

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
UniProt:K4ASL6	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF664
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc01g006500.2	EnsemblPlants:Solyc01g006500.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00027622D9
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:1089833..1093094

Molecular Weight (calculated)

55590.9 Da

IEP (calculated)

9.200

GRAVY (calculated)

-0.290

Length

488 amino acids

Sequence
(BLAST)

001: MASFFGPSNP IPPSSFGPPK TDPLSRRNDP LTHRKVSVPG SKQESSSMEF EKLKVKEAKE RKEETNKKIA SQKAVSIILR REAAKAVIEY KKKKGNSKKL
101: LPRTVLEALH ERITALRWES ALKVFELLQE QLWYRPNPGI YIKLIVMLGK CKEPEKAQSL FEMMVEEGCV VNQEAYTALL SAYSRSGRFH EAFSILEEMK
201: NIPNCLPDVF TYSILIKSCL QVYDFDKVQI LLSDMECLGI KANTVTYNTL IDSYGKAKRF KEMESTLVEM LRRRDCKPDV WTMNSTLRAF GGSGQIEMME
301: KCYEKFQSAG IEPSIKTFNI LLDSYGKTEN YEKMGAVMEF MQKYHFSWTI VTYNIVIDAF GRAGDLKQME FLFRLMQSER IKPNCVTLCS LVRAYGKAGK
401: AEKLGAVLRF IENSDVALDT VFFNCLVDAY GMMGCFTELK GVLEMMEQSG CKPDKITYRS MIKAYSVNGM TNKASELRNI LASLEKAR

Best Arabidopsis Sequence Match ( AT5G48730.1 )
(BLAST)

001: MVSLSTSTSH APPLPTNRRT AERTFTVRCI SISPREPNYA ITSDKSNNTS LSLRETRQSK WLINAEDVNE RDSKEIKEDK NTKIASRKAI SIILRREATK
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.