CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037476_P001	Maize	plastid	94.51	94.51
Os06t0172000-01	Rice	plastid	85.16	82.0
TraesCS7A01G133100.1	Wheat	plastid	82.52	79.92
TraesCS7B01G033900.1	Wheat	plastid	81.71	79.29
HORVU7Hr1G027800.8	Barley	cytosol	78.05	79.18
VIT_07s0005g06720.t01	Wine grape	cytosol	54.06	67.17
GSMUA_Achr1P15160_001	Banana	plastid	64.43	64.56
PGSC0003DMT400082022	Potato	plastid	60.16	60.66
Solyc01g006500.2.1	Tomato	plastid	59.55	60.04
KRH46714	Soybean	plastid	62.6	59.81
AT5G48730.1	Thale cress	plastid	60.37	58.46
CDX86283	Canola	plastid	59.96	58.07
CDX85360	Canola	plastid	59.55	58.02
Bra037464.1-P	Field mustard	plastid	60.16	55.33
KXG40345	Sorghum	plastid	38.82	39.3
OQU86802	Sorghum	cytosol	24.19	38.51
EER97871	Sorghum	plastid	35.57	31.25
KXG30749	Sorghum	plastid	21.14	20.88
OQU77078	Sorghum	mitochondrion	17.07	17.0
KXG36606	Sorghum	plastid	22.97	14.62
EES13486	Sorghum	plastid	17.89	14.62
OQU84443	Sorghum	cytosol	17.28	14.05
KXG20531	Sorghum	plastid	21.34	13.53
EER99505	Sorghum	plastid	18.29	13.47
OQU90703	Sorghum	plastid	21.14	11.59
EES16159	Sorghum	plastid	18.9	10.67
KXG36530	Sorghum	plastid	17.68	10.62

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8076163	UniProt:C5Z509	ncoils:Coil	EnsemblPlants:EER87934
ProteinID:EER87934	ProteinID:EER87934.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF664	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3010G056300
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A89106	RefSeq:XP_002436567.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:4381364..4385097

Molecular Weight (calculated)

56056.2 Da

IEP (calculated)

9.493

GRAVY (calculated)

-0.324

Length

492 amino acids

Sequence
(BLAST)

001: MAAGPVTAPF SMAVPSARRN RALVPTVSAA REPARAWTAA GAEGRARRGK EAEVEDEEEA ERRRKEEVNR KIASRKALSV ILRREATKAV LDKRKPGKGT
101: RRLLPGTVLE ALHERVAALR WDSALKVFEL MRDQVWYRPY IGIYIKLITM LGKCKKPEKA HELFQAMIDE GCAPNLESYT ALVSAYSRSG RFHEAFNLLD
201: RMKDTPGCQP DVKTYSILIK SCLHAYDFEK VKSLLTDMAR AGIRPNTVTY NTLIDAYGKA RRFPEMESTL LKMLSQNCKP DIWTMNSTLR AFGSSGQIET
301: MESCYEKFQA SGIVPNIKTY NILLDSYGKA KMYEKMGAVM EYMQKYYYSW TIVTYNVVID AFGRAGDLEQ MEYIFRLMKS ERIKPNCVTL CSVVRAYGRA
401: GEVKKIKTVL RIVENSDITL DIVFFNCLVD AYGRVGCLAE MWDILDLMKE HRCKPDKVTC ATMIKWFLIK GIDDHRVQYL RDLKDGRATD DT

Best Arabidopsis Sequence Match ( AT5G48730.1 )
(BLAST)

001: MVSLSTSTSH APPLPTNRRT AERTFTVRCI SISPREPNYA ITSDKSNNTS LSLRETRQSK WLINAEDVNE RDSKEIKEDK NTKIASRKAI SIILRREATK
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.