Factsheet for GSMUA_Achr1P15160_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g06720.t01	Wine grape	cytosol	57.23	70.96
PGSC0003DMT400082022	Potato	plastid	65.17	65.57
HORVU7Hr1G027800.8	Barley	cytosol	64.56	65.36
Solyc01g006500.2.1	Tomato	plastid	64.56	64.96
TraesCS7A01G133100.1	Wheat	plastid	66.8	64.57
TraesCS7B01G033900.1	Wheat	plastid	66.6	64.5
EER87934	Sorghum	plastid	64.56	64.43
Os06t0172000-01	Rice	plastid	66.8	64.19
Zm00001d037476_P001	Maize	plastid	63.95	63.82
CDX86283	Canola	plastid	64.15	62.01
CDX85360	Canola	plastid	63.75	61.98
AT5G48730.1	Thale cress	plastid	63.75	61.61
KRH46714	Soybean	plastid	63.95	60.97
Bra037464.1-P	Field mustard	plastid	64.77	59.44
GSMUA_Achr11P...	Banana	plastid	39.31	35.54
GSMUA_Achr11P...	Banana	endoplasmic reticulum	40.53	29.35
GSMUA_Achr5P22880_001	Banana	plastid	22.61	21.76
GSMUA_Achr1P10690_001	Banana	cytosol	12.63	18.73
GSMUA_Achr6P16830_001	Banana	cytosol	21.18	18.51
GSMUA_Achr7P03530_001	Banana	cytosol	20.57	17.15
GSMUA_Achr9P12090_001	Banana	mitochondrion	19.96	14.24
GSMUA_Achr1P18290_001	Banana	cytosol	18.74	13.86
GSMUA_Achr2P04910_001	Banana	plastid	23.22	13.69
GSMUA_Achr2P02090_001	Banana	cytosol	17.72	13.38
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	15.68	9.19
GSMUA_Achr8P07220_001	Banana	cytosol	17.52	7.9

Protein Annotations

EnsemblPlants:GSMUA_Achr1P15160_001	EnsemblPlants:GSMUA_Achr1T15160_001	EnsemblPlantsGene:GSMUA_Achr1G15160_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR24015	PANTHER:PTHR24015:SF664	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI000294BB87	UniProt:M0S024	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G15160_001]

Coordinates

chr1:-:11427093..11430777

Molecular Weight (calculated)

55822.9 Da

IEP (calculated)

9.639

GRAVY (calculated)

-0.309

Length

491 amino acids

Sequence
(BLAST)

001: MATASARSPL SASHPRDDLK KKNLNKNSTV AVAAAVQSQP DRRSSGRSER EKEKVRKERE EEREKKEVVN RRIASKKAIS IILRREATKA VIEKKRGRTN
101: SRKLLPRTVL EALHERITAL RWESALKVFE LLREQLWYRP NSGIYIKLIV MLGKCKQPER AQALFQAMVD EGCIINHESY TALVSAYSRS GFLDQAFSLL
201: NKMKTIDGCQ PDVHTYSILI KSCVQVFAFD KVQILLSDME SQGIKPTIIT YNTLVDAYGK AGRFAEMEST LMEMLSNHDC KPDVWTMNAT LRAFGGSGQI
301: EMMEKCYDKF QSSGISPDIK TFNILLDSYG KAKRYEKMGA VMEYMQKYYF SWTVVTYNVV IDAFGRAGDL KQMEYIFRLM KSEGIKPNCV TLCSLIRAYG
401: RTGSVDKIKA VVRFIGNSDV MLDVVFFNCL VDAYGRAGCL VEMREVLEMM KARGCTPDKV TYSTMIKAYL SRGIDGDHVQ GLRDFYREEI A

Best Arabidopsis Sequence Match ( AT5G48730.1 )
(BLAST)

001: MVSLSTSTSH APPLPTNRRT AERTFTVRCI SISPREPNYA ITSDKSNNTS LSLRETRQSK WLINAEDVNE RDSKEIKEDK NTKIASRKAI SIILRREATK
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.