Factsheet for GSMUA_Achr7P21150_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0213300-01	Rice	cytosol	51.07	63.22
KXG36530	Sorghum	plastid	60.98	62.39
VIT_08s0007g08590.t01	Wine grape	cytosol	63.01	61.97
Zm00001d021871_P002	Maize	plastid	58.95	61.37
HORVU2Hr1G056820.1	Barley	plastid	58.83	60.2
TraesCS2B01G269700.1	Wheat	plastid	58.47	60.05
KRH66918	Soybean	cytosol	59.31	59.38
TraesCS2D01G244500.3	Wheat	plastid	58.71	58.71
TraesCS2A01G239500.2	Wheat	plastid	58.47	57.38
AT2G41720.1	Thale cress	cytosol, plastid	55.01	56.08
CDY23832	Canola	plastid	53.94	55.26
CDX79920	Canola	cytosol, plastid	53.58	54.96
Solyc04g015950.1.1	Tomato	plastid	55.73	54.94
Bra004642.1-P	Field mustard	cytosol, plastid	53.58	54.89
KRG95241	Soybean	plastid	42.0	51.69
GSMUA_Achr6P16830_001	Banana	cytosol	13.6	20.28
GSMUA_Achr1P10690_001	Banana	cytosol	7.4	18.73
GSMUA_Achr1P18290_001	Banana	cytosol	14.8	18.67
GSMUA_Achr2P02090_001	Banana	cytosol	14.44	18.62
GSMUA_Achr2P04910_001	Banana	plastid	18.14	18.25
GSMUA_Achr5P22880_001	Banana	plastid	10.74	17.65
GSMUA_Achr9P12090_001	Banana	mitochondrion	13.37	16.28
GSMUA_Achr11P...	Banana	plastid	10.38	16.02
GSMUA_Achr1P15160_001	Banana	plastid	9.19	15.68
GSMUA_Achr7P03530_001	Banana	cytosol	10.26	14.6
GSMUA_Achr11P...	Banana	endoplasmic reticulum	10.62	13.13
GSMUA_Achr8P07220_001	Banana	cytosol	11.93	9.19

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009507
GO:GO:0009536	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010239
EnsemblPlantsGene:GSMUA_Achr7G21150_001	EnsemblPlants:GSMUA_Achr7P21150_001	EnsemblPlants:GSMUA_Achr7T21150_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0TJF2
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1614
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000295180A	SEG:seg

Description

Pentatricopeptide repeat-containing protein At2g41720 [Source:GMGC_GENE;Acc:GSMUA_Achr7G21150_001]

Coordinates

chr7:-:24013783..24028473

Molecular Weight (calculated)

94353.7 Da

IEP (calculated)

8.520

GRAVY (calculated)

-0.255

Length

838 amino acids

Sequence
(BLAST)

001: MDCSSALSTK PVPPAPPNPS SANLPESPTP QRKIWIKPTA PASKKQQQQQ RRKKGSGWDE KRVVGFVDYD EGERRVSTEI SGARKDEIPA RYRLRVDGSR
101: WQKDWKLSEV VDQVMRLRHW EDIDGVLNRW AGRFARKNFP LLIREITSTG SLDHAVHVFR WMKNQRHYSP RSDIYNMLIS LHAKHNQTDQ ARGLFFEMQQ
201: WRCKPDTETY NSLINAHGRV GQWRWAVNIM EDMLQASIPP SRTTYNNLIS ACGSGGHWKE ALEICKKMTE NGVGPDLVTH NIILSAFKRG AQYSKALAYF
301: DLMKETDICP DTITFNIVIH CLVKLGQFGK AVDVFNSMRE RGAKCQPDIV TFTCIIHAYS TCGQIENCKV AFDMILAEGL KPNIVAYNAL IGAYASNGMH
401: TEALATFNLL KHAGLRPDVV SYTSLLNAYG RSGQPEKAKG VFDMIKQNSL RPNIVSYNAL IDAYGTSGLL AEAIGVLHAM EEDGVQADIV SISTLLAACG
501: RCSQIVNIDS VLSAARSRRI KLNTVAYNSA IGSYMSVEEY DKAVSLYRSM REDNIKPDSI TFNILISGSC KVKKYAESLQ FLDEMMDLNI PFSKEVYSSL
601: IHSYSKQGQL TEAESIFNMM KGTDCSPDVI TYTSMIHAYS IAGNWMKAWE LFEDMERNNI QPDPILCSSL IEALNIGCQP EKVLWLAELM REKSIPLNTS
701: ASFGVIYACS MVRDWRAASK TIECMETSFS SISLGLLNQI LHFLGKSGKI ETMMKVYYKI LSSHSNVSLV THTILLKKLL ASGRWRMCIE VLQWMEDAGI
801: QPTLNMYRSV LSYARKDNSV EHANLIQERI SNLRGKID

Best Arabidopsis Sequence Match ( AT2G41720.1 )
(BLAST)

001: MATVTNFKLV TPPESSRADK PGATKASDAF QEKKSVSVNY DRGEHEVSVN IGGLRKADIP RRYRIRVEND RFQKDWSVSE VVDRLMALNR WEEVDGVLNS
101: WVGRFARKNF PVLIRELSRR GCIELCVNVF KWMKIQKNYC ARNDIYNMMI RLHARHNWVD QARGLFFEMQ KWSCKPDAET YDALINAHGR AGQWRWAMNL
201: MDDMLRAAIA PSRSTYNNLI NACGSSGNWR EALEVCKKMT DNGVGPDLVT HNIVLSAYKS GRQYSKALSY FELMKGAKVR PDTTTFNIII YCLSKLGQSS
301: QALDLFNSMR EKRAECRPDV VTFTSIMHLY SVKGEIENCR AVFEAMVAEG LKPNIVSYNA LMGAYAVHGM SGTALSVLGD IKQNGIIPDV VSYTCLLNSY
401: GRSRQPGKAK EVFLMMRKER RKPNVVTYNA LIDAYGSNGF LAEAVEIFRQ MEQDGIKPNV VSVCTLLAAC SRSKKKVNVD TVLSAAQSRG INLNTAAYNS
501: AIGSYINAAE LEKAIALYQS MRKKKVKADS VTFTILISGS CRMSKYPEAI SYLKEMEDLS IPLTKEVYSS VLCAYSKQGQ VTEAESIFNQ MKMAGCEPDV
601: IAYTSMLHAY NASEKWGKAC ELFLEMEANG IEPDSIACSA LMRAFNKGGQ PSNVFVLMDL MREKEIPFTG AVFFEIFSAC NTLQEWKRAI DLIQMMDPYL
701: PSLSIGLTNQ MLHLFGKSGK VEAMMKLFYK IIASGVGINL KTYAILLEHL LAVGNWRKYI EVLEWMSGAG IQPSNQMYRD IISFGERSAG IEFEPLIRQK
801: LESLRNKGEG LIPTFRHEGT LL

Arabidopsis Description

EMB2654EMB2654 [Source:UniProtKB/TrEMBL;Acc:A0A178VXZ9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.