Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13486 | Sorghum | plastid | 39.06 | 70.6 |
| Os08t0191900-01 | Rice | plastid | 39.25 | 70.11 |
| Zm00001d024248_P001 | Maize | plastid | 38.6 | 70.0 |
| TraesCS3A01G523700.1 | Wheat | plastid | 38.33 | 68.59 |
| TraesCSU01G054500.1 | Wheat | cytosol, plastid | 38.24 | 68.09 |
| TraesCS3D01G529200.1 | Wheat | plastid | 37.96 | 67.59 |
| HORVU3Hr1G114340.4 | Barley | mitochondrion | 39.06 | 67.03 |
| VIT_12s0028g01140.t01 | Wine grape | cytosol | 33.73 | 66.97 |
| CDY06027 | Canola | plastid | 32.54 | 66.67 |
| PGSC0003DMT400041148 | Potato | plastid | 34.56 | 65.73 |
| Solyc07g043600.2.1 | Tomato | nucleus | 34.83 | 65.34 |
| CDX71917 | Canola | plastid | 32.63 | 65.14 |
| KRH36131 | Soybean | plastid | 32.44 | 63.83 |
| KRG90623 | Soybean | nucleus | 32.26 | 62.46 |
| AT3G59040.2 | Thale cress | endoplasmic reticulum | 33.36 | 61.53 |
| CDX98345 | Canola | cytosol | 14.15 | 49.52 |
| GSMUA_Achr1P10690_001 | Banana | cytosol | 6.07 | 19.94 |
| GSMUA_Achr6P16830_001 | Banana | cytosol | 10.2 | 19.75 |
| GSMUA_Achr9P12090_001 | Banana | mitochondrion | 11.76 | 18.6 |
| GSMUA_Achr7P03530_001 | Banana | cytosol | 9.56 | 17.66 |
| GSMUA_Achr1P15160_001 | Banana | plastid | 7.9 | 17.52 |
| GSMUA_Achr11P... | Banana | plastid | 8.64 | 17.31 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum | 9.93 | 15.93 |
| GSMUA_Achr5P22880_001 | Banana | plastid | 7.08 | 15.1 |
| GSMUA_Achr1P18290_001 | Banana | cytosol | 8.92 | 14.61 |
| GSMUA_Achr2P02090_001 | Banana | cytosol | 8.55 | 14.31 |
| GSMUA_Achr2P04910_001 | Banana | plastid | 10.94 | 14.29 |
| GSMUA_Achr7P21150_001 | Banana | cytosol, plastid | 9.19 | 11.93 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:16.12.4.6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0016740 |
| GO:GO:0032259 | EnsemblPlantsGene:GSMUA_Achr8G07220_001 | EnsemblPlants:GSMUA_Achr8P07220_001 | EnsemblPlants:GSMUA_Achr8T07220_001 | InterPro:IPR001678 | InterPro:IPR002885 |
| InterPro:IPR011990 | UniProt:M0TNC5 | InterPro:MeTrfase_RsmB/NOP2 | PFAM:PF01189 | PFAM:PF01535 | PFAM:PF13041 |
| PFAM:PF13812 | PRINTS:PR02008 | PRINTS:PR02010 | PFscan:PS51375 | PFscan:PS51686 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF722 | InterPro:Pentatricopeptide_repeat | InterPro:RCMT | InterPro:RCMT_subfamily_9 | InterPro:SAM-dependent_MTases | SUPFAM:SSF48452 |
| SUPFAM:SSF53335 | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0002950644 | SEG:seg |
Description
Pentatricopeptide repeat-containing protein At3g59040 [Source:GMGC_GENE;Acc:GSMUA_Achr8G07220_001]
Coordinates
chr8:-:4752048..4773398
Molecular Weight (calculated)
122506.0 Da
IEP (calculated)
8.503
GRAVY (calculated)
-0.348
Length
1088 amino acids
Sequence
(BLAST)
(BLAST)
0001: MCVCDVTEVQ ARAIISAAER ETEDAEAKKQ SDRRPDSSSL PPPPAPVPPR VLNRSLSMKR SLQSVRPSTE ADKAFRSLFS LSAPLSLSPA RWRALMEAIG
0101: SRSLLSFSCN LCKTKVLVIG SFRPLDVKTK RSFEIVCHAM LTPRKFMQRR KKVEIFKDAA DEAEQKNWRK LMKEIEELGS AVPILKTQRA KMDALPRDLV
0201: LGTLVRFKQL KKWGLVSEIL EWLRSQHWWD FSEMDFLMLI TAYGKLGDFN RAERVLKYMN KKGYSPSVIS HTALMEAYGR ARQFSKAEAI FRRMQSAGPD
0301: PSPVTYQIIL KTFVEGDMFK EAESVFESLL NEERSSFKPD QKMFHMMIYM YKKAGNYDQA RRTFALMDER RIPQSTVTYN SLMSFETDYK EVSRIYDKMQ
0401: RAGVKPDVVS YALLISAYGK ARREQEALAV FEEMLDAGVR PTRKAYNILL DAFAISGMVD EARTVFKSMR RDKYEPDLCS YSTMLSAYVN ASDMDGAEKF
0501: FRRIKEDGLK PNVVVYGTLM KGYAKLNNLE KVMRVYERMR LQGVEANQTI YTTIMDAHGK NSDFGSSVIW FKEMSAHGLP PDQKAKNILL SLAKTPEEQK
0601: EANELVGNPS VSLHDSPKDS QITEFVGDDE HGEQLKCAKT TNSGRDLTAF GHLVVNASKF TDLGNDDDND YDDDDGKRCF CDFMYCRMGS IEATSSVHNQ
0701: EKGLSLSLPR SFLHFLEENG LDPSIYAMIE TIPRYIRVKP GCESQLVEIE NELKCRLEKV SWLSGFFAIP SQIQIAGSKA YQQGKIYGMD AASGAAVSAL
0801: NVSPADHVLD LCCAPGAKLC MLADLLGNSG SLTGVDIARA RLAACRTMLQ KYSLGDHCRL FVADGTSFSL LPVRSCMETK PCLSGKNDPD IFAEWTAKRS
0901: WRERKKAAKA GNIADLDQIK STSPELIFYG RYSGVVGLCK NELFRAVDEP SFSGYDRVLV DAECTHDGSL KHIQKFEDWG WETLERRVLD AKRTDSLLHL
1001: QLQLLTNGFR LLRVGGTLVY STCSLTVAQN EDVVKQFLSR NSLAELRHVE ASAIWPCRSG GIPNTLRFDP KTSQTSGLFI AKFTRLAS
0101: SRSLLSFSCN LCKTKVLVIG SFRPLDVKTK RSFEIVCHAM LTPRKFMQRR KKVEIFKDAA DEAEQKNWRK LMKEIEELGS AVPILKTQRA KMDALPRDLV
0201: LGTLVRFKQL KKWGLVSEIL EWLRSQHWWD FSEMDFLMLI TAYGKLGDFN RAERVLKYMN KKGYSPSVIS HTALMEAYGR ARQFSKAEAI FRRMQSAGPD
0301: PSPVTYQIIL KTFVEGDMFK EAESVFESLL NEERSSFKPD QKMFHMMIYM YKKAGNYDQA RRTFALMDER RIPQSTVTYN SLMSFETDYK EVSRIYDKMQ
0401: RAGVKPDVVS YALLISAYGK ARREQEALAV FEEMLDAGVR PTRKAYNILL DAFAISGMVD EARTVFKSMR RDKYEPDLCS YSTMLSAYVN ASDMDGAEKF
0501: FRRIKEDGLK PNVVVYGTLM KGYAKLNNLE KVMRVYERMR LQGVEANQTI YTTIMDAHGK NSDFGSSVIW FKEMSAHGLP PDQKAKNILL SLAKTPEEQK
0601: EANELVGNPS VSLHDSPKDS QITEFVGDDE HGEQLKCAKT TNSGRDLTAF GHLVVNASKF TDLGNDDDND YDDDDGKRCF CDFMYCRMGS IEATSSVHNQ
0701: EKGLSLSLPR SFLHFLEENG LDPSIYAMIE TIPRYIRVKP GCESQLVEIE NELKCRLEKV SWLSGFFAIP SQIQIAGSKA YQQGKIYGMD AASGAAVSAL
0801: NVSPADHVLD LCCAPGAKLC MLADLLGNSG SLTGVDIARA RLAACRTMLQ KYSLGDHCRL FVADGTSFSL LPVRSCMETK PCLSGKNDPD IFAEWTAKRS
0901: WRERKKAAKA GNIADLDQIK STSPELIFYG RYSGVVGLCK NELFRAVDEP SFSGYDRVLV DAECTHDGSL KHIQKFEDWG WETLERRVLD AKRTDSLLHL
1001: QLQLLTNGFR LLRVGGTLVY STCSLTVAQN EDVVKQFLSR NSLAELRHVE ASAIWPCRSG GIPNTLRFDP KTSQTSGLFI AKFTRLAS
001: MSQAVIFKPF VSVPSSNHSQ RKLQNNIINV GVKIQNRFRV VCMGMLAPRK FLQKRRKMEV FKDAADETDQ KRWRGLMLEI ESTGSAVPVL RQYKTDGDQG
101: LPRDLVLGTL VRFKQLKKWN LVSEILEWLR YQNWWNFSEI DFLMLITAYG KLGNFNGAER VLSVLSKMGS TPNVISYTAL MESYGRGGKC NNAEAIFRRM
201: QSSGPEPSAI TYQIILKTFV EGDKFKEAEE VFETLLDEKK SPLKPDQKMY HMMIYMYKKA GNYEKARKVF SSMVGKGVPQ STVTYNSLMS FETSYKEVSK
301: IYDQMQRSDI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA ISGMVEQAKT VFKSMRRDRI FPDLWSYTTM LSAYVNASDM
401: EGAEKFFKRI KVDGFEPNIV TYGTLIKGYA KANDVEKMME VYEKMRLSGI KANQTILTTI MDASGRCKNF GSALGWYKEM ESCGVPPDQK AKNVLLSLAS
501: TQDELEEAKE LTGIRNETAT IIARVYGSDD DEEGVEDISS ESSDDEDEGD DDDDDARETV LYDKPQEGSL GYGSLQTEEL VGL
101: LPRDLVLGTL VRFKQLKKWN LVSEILEWLR YQNWWNFSEI DFLMLITAYG KLGNFNGAER VLSVLSKMGS TPNVISYTAL MESYGRGGKC NNAEAIFRRM
201: QSSGPEPSAI TYQIILKTFV EGDKFKEAEE VFETLLDEKK SPLKPDQKMY HMMIYMYKKA GNYEKARKVF SSMVGKGVPQ STVTYNSLMS FETSYKEVSK
301: IYDQMQRSDI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA ISGMVEQAKT VFKSMRRDRI FPDLWSYTTM LSAYVNASDM
401: EGAEKFFKRI KVDGFEPNIV TYGTLIKGYA KANDVEKMME VYEKMRLSGI KANQTILTTI MDASGRCKNF GSALGWYKEM ESCGVPPDQK AKNVLLSLAS
501: TQDELEEAKE LTGIRNETAT IIARVYGSDD DEEGVEDISS ESSDDEDEGD DDDDDARETV LYDKPQEGSL GYGSLQTEEL VGL
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J741]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.