Factsheet for GSMUA_Achr11P21770_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
golgi 4
extracellular 3
plasma membrane 4
endoplasmic reticulum 5
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40345	Sorghum	plastid	45.72	63.79
HORVU4Hr1G086600.3	Barley	plastid	45.43	62.1
Zm00001d027349_P001	Maize	plastid	44.25	61.86
TraesCS4D01G353200.2	Wheat	cytosol	44.25	61.86
Os03t0115300-00	Rice	plastid	44.25	61.22
VIT_13s0064g00400.t01	Wine grape	cytosol	43.95	60.2
TraesCS4B01G359900.1	Wheat	plastid	44.25	59.64
TraesCS5A01G528400.1	Wheat	plastid	46.9	59.33
OQU86802	Sorghum	cytosol	26.99	59.22
PGSC0003DMT400008123	Potato	cytosol, plastid	38.5	56.86
Solyc08g045780.2.1	Tomato	cytosol	38.35	56.52
KRH14115	Soybean	plastid	39.68	55.93
CDX78150	Canola	plastid	37.46	52.37
AT3G53170.2	Thale cress	plastid	38.2	51.9
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	37.61	51.1
CDX73576	Canola	plastid	37.17	50.5
GSMUA_Achr1P15160_001	Banana	plastid	29.35	40.53
GSMUA_Achr11P...	Banana	plastid	26.99	33.7
GSMUA_Achr5P22880_001	Banana	plastid	16.08	21.37
GSMUA_Achr1P10690_001	Banana	cytosol	9.14	18.73
GSMUA_Achr6P16830_001	Banana	cytosol	15.19	18.33
GSMUA_Achr7P03530_001	Banana	cytosol	13.72	15.79
GSMUA_Achr9P12090_001	Banana	mitochondrion	15.19	14.97
GSMUA_Achr2P04910_001	Banana	plastid	17.11	13.93
GSMUA_Achr2P02090_001	Banana	cytosol	12.98	13.54
GSMUA_Achr1P18290_001	Banana	cytosol	11.95	12.2
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	13.13	10.62
GSMUA_Achr8P07220_001	Banana	cytosol	15.93	9.93

Protein Annotations

Gene3D:1.25.40.10	Gene3D:2.60.40.420	MapMan:35.1	InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0022900	EnsemblPlantsGene:GSMUA_Achr11G21770_001	EnsemblPlants:GSMUA_Achr11P21770_001	EnsemblPlants:GSMUA_Achr11T21770_001	InterPro:IPR002885
InterPro:IPR003245	InterPro:IPR008972	InterPro:IPR011990	UniProt:M0RUA7	PFAM:PD003122	PFAM:PF01535
PFAM:PF02298	PFAM:PF13041	PFscan:PS51375	PFscan:PS51485	PANTHER:PTHR24015	PANTHER:PTHR24015:SF425
InterPro:Pentatricopeptide_repeat	InterPro:Phytocyanin_dom	SUPFAM:SSF49503	SignalP:SignalP-noTM	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002954823	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat-containing protein At3g53170 [Source:GMGC_GENE;Acc:GSMUA_Achr11G21770_001]

Coordinates

chr11:-:22243493..22246450

Molecular Weight (calculated)

75719.3 Da

IEP (calculated)

7.013

GRAVY (calculated)

-0.110

Length

678 amino acids

Sequence
(BLAST)

001: MHRFPILIPD SLRTSFQVVA MVLLLSLLQQ NGCWCYQYKV GDLDCWGLPP PSDPLLYSSW SKNHHFSLGD SLLFLYPPSQ DSVIQVTERA FNSCGLEDPI
101: MTLRDGNSLF NLSAPGYYYF ISGVAGHCEK NQKLAIAIPS ANGTFFPPAA DFATAPTGSQ SYPIVFGPAS AQGPSTAPAA VVRAPAAMGS VVVVAAALLL
201: GFSLLWRGNC RPPFSVRAAR RSAASKGLQK DAKRDLSRIL RTEAAVLGVE RKAGSAKSTR LWPRAVLEAL DDSISNNRWE SALKIFGLLR RQHWYQPKPQ
301: TYAKLLTMLG KCRQPDHATS LFRVMLSEGL NPTLDVYTSL VGAYGHSGLL DEAIHTMDEM KTISDCRPDA YTYTILINCC CKLRRFDLVP SLLAEMSYLG
401: IESNTVTHNT IIDGYGKVGM LEEMEDHLSN MLESGKCLPD IFTMNSFIWA YGSVGRVEEM ERWYDEFQHM GVEPDLQTFN ILIKSYGKAG MYGKMVLVMN
501: YMKKRFFSPD AVTFNIIIEC FGRAGNIEKM EYFFRLMKIQ GVKPNSVTYC SLVSGYSKAN LLEKVPSIIR QTENTDVVLD TPFFNCVISA YGQAREVKIM
601: EEMFTHMKEK NCTPDTITFA TMIQAYNAIG MYEAAKELEN KMHITERRFL APTNSKKHHE ASYVDEDIGP SCEDSDAI

Best Arabidopsis Sequence Match ( AT3G53170.1 )
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.