Factsheet for GSMUA_Achr1P10690_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64953	Canola	cytosol	47.13	53.61
HORVU0Hr1G007320.4	Barley	cytosol	63.75	45.77
Os06t0710800-01	Rice	cytosol	67.37	45.33
AT5G36300.2	Thale cress	cytosol	44.41	44.55
CDX74617	Canola	mitochondrion	46.83	44.16
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	50.76	44.09
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	67.07	43.53
TraesCS7A01G407400.1	Wheat	cytosol	59.52	43.11
VIT_16s0039g02560.t01	Wine grape	cytosol	63.44	42.86
OQU77078	Sorghum	mitochondrion	63.75	42.71
TraesCS7D01G400900.3	Wheat	cytosol	66.77	42.58
TraesCS7B01G307500.2	Wheat	cytosol	66.77	42.58
Bra035352.1-P	Field mustard	mitochondrion	56.5	38.8
KRH27783	Soybean	cytosol, plastid	60.42	38.31
KRH77730	Soybean	plastid	60.42	38.24
Zm00001d014751_P003	Maize	plastid	54.38	33.83
PGSC0003DMT400060882	Potato	mitochondrion	55.29	33.64
GSMUA_Achr9P12090_001	Banana	mitochondrion	42.6	20.49
GSMUA_Achr6P16830_001	Banana	cytosol	24.17	14.23
GSMUA_Achr5P22880_001	Banana	plastid	19.94	12.94
GSMUA_Achr1P15160_001	Banana	plastid	18.73	12.63
GSMUA_Achr7P03530_001	Banana	cytosol	21.75	12.22
GSMUA_Achr11P...	Banana	plastid	19.34	11.79
GSMUA_Achr1P18290_001	Banana	cytosol	20.54	10.24
GSMUA_Achr2P02090_001	Banana	cytosol	19.94	10.15
GSMUA_Achr2P04910_001	Banana	plastid	23.87	9.48
GSMUA_Achr11P...	Banana	endoplasmic reticulum	18.73	9.14
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	18.73	7.4
GSMUA_Achr8P07220_001	Banana	cytosol	19.94	6.07

Protein Annotations

EnsemblPlants:GSMUA_Achr1P10690_001	EnsemblPlants:GSMUA_Achr1T10690_001	EnsemblPlantsGene:GSMUA_Achr1G10690_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF483	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI000294B082	UniProt:M0RYS8	MapMan:35.1	:	:

Description

Putative pentatricopeptide repeat-containing protein At5g36300 [Source:GMGC_GENE;Acc:GSMUA_Achr1G10690_001]

Coordinates

chr1:+:8079696..8084051

Molecular Weight (calculated)

37537.1 Da

IEP (calculated)

8.197

GRAVY (calculated)

-0.144

Length

331 amino acids

Sequence
(BLAST)

001: MEAAGMRPST ACYARLVYAL GRTGRTLEAD AVFREMKWSG HRLTSKEYNA LLGGFLRKGQ LLMADRLLMK EKGFWLDSFV YSKIIRLYRD NGMWKKAMSL
101: VVEMHELGIE PDVRMYNGMI DTFGKYGQLD EAVKIFEKMQ STGLKPDIMT WNALIRWHCK AGDLKHALGF FAKMQEAGLY PDPKIFECVA ALKAEGMQVS
201: ASIYCVLANA YAQQGLCEQT LRVLQLMEAD GIEPNLIMLN LLMNAFGIAG RHFEAMAVFE HIKESGISPD VVTYCTLMKA FMRGKKYEQV PIIYKEMEHA
301: GCTPDRKARE MLHNASSICE QRGNDTREAM L

Best Arabidopsis Sequence Match ( AT5G36300.2 )
(BLAST)

001: MAPISHTRIS LSMYNSWIRY FCRTGETNEA MSLLAEIHSL GSRPDPLSYV SFIETLASLR RTLEADALFH EVVRFMIYGS YSVRLYNALV SRYLRKEVSW
101: RVVNEMKKRK FRLNSFVYGK IIRIYRDNGM WKKALGIVEE IREIGLPMDV EIYNSVIDTF GKYGELDEEL QVLEKLQRSS DSRPNIRTWN SLIRWHCHHG
201: AVDMALELFT MIFEDIGELV GKLKSQGVAP SANLFCTLAN AYAQQGLCKQ TVKVLKMMEN EGIEPNLIML NVLINAFGTA GKHMEALSIY HHIKETVWIH
301: PDVVTYSTLM KAFTRAKKYE MVCSFYLVTL

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At5g36300 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.