Factsheet for VIT_16s0039g02560.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P10690_001	Banana	cytosol	42.86	63.44
CDY64953	Canola	cytosol	37.35	62.89
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	47.55	61.15
KRH27783	Soybean	cytosol, plastid	60.82	57.09
KRH77730	Soybean	plastid	59.8	56.02
Os06t0710800-01	Rice	cytosol	55.31	55.08
CDX74617	Canola	mitochondrion	39.39	54.99
AT5G36300.2	Thale cress	cytosol	36.73	54.55
OQU77078	Sorghum	mitochondrion	54.29	53.85
Bra035352.1-P	Field mustard	mitochondrion	52.86	53.73
HORVU0Hr1G007320.4	Barley	cytosol	49.59	52.71
TraesCS7A01G407400.1	Wheat	cytosol	48.78	52.3
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	53.67	51.57
PGSC0003DMT400060882	Potato	mitochondrion	57.14	51.47
TraesCS7B01G307500.2	Wheat	cytosol	53.88	50.87
TraesCS7D01G400900.3	Wheat	cytosol	53.88	50.87
Zm00001d014751_P003	Maize	plastid	47.55	43.8
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	40.82	28.78
VIT_07s0005g06720.t01	Wine grape	cytosol	15.71	19.44
VIT_07s0031g01360.t01	Wine grape	plastid	18.57	18.61
VIT_13s0064g00400.t01	Wine grape	cytosol	17.14	16.97
VIT_01s0011g01970.t01	Wine grape	cytosol	17.96	15.12
VIT_05s0020g00690.t01	Wine grape	plastid	15.1	14.86
VIT_12s0028g01140.t01	Wine grape	cytosol	15.1	13.5
VIT_03s0091g00440.t01	Wine grape	plastid	22.04	13.32
VIT_11s0052g00600.t01	Wine grape	plastid	20.41	12.18
VIT_08s0007g08590.t01	Wine grape	cytosol	20.61	11.85
VIT_17s0000g07500.t01	Wine grape	plastid	20.61	11.62
VIT_07s0005g01660.t01	Wine grape	plastid	18.78	10.61

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100257976	wikigene:100257976	MapMan:35.1	EMBL:AM437589	ProteinID:CAN76113
ProteinID:CAN76113.1	ProteinID:CCB50621	ProteinID:CCB50621.1	UniProt:F6HEH5	EMBL:FN595750	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100257976	wikigene:LOC100257976	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF483	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015C82D5	ArrayExpress:VIT_16s0039g02560	EnsemblPlantsGene:VIT_16s0039g02560
EnsemblPlants:VIT_16s0039g02560.t01	RefSeq:XP_002275213	RefSeq:XP_002275213.2	:	:	:

Description

No Description!

Coordinates

chr16:-:2800685..2803228

Molecular Weight (calculated)

55142.3 Da

IEP (calculated)

6.361

GRAVY (calculated)

-0.090

Length

490 amino acids

Sequence
(BLAST)

001: MHFMVSLMGP PFPTLINTHM KNKHQVSVEE VSISENGEEL SGVVYNARIR ESCRVGDVDK AMKLLAQMEA LGFSLSLGSY TTVIEALGSV GRTLEAEAIF
101: REMVHLGLKL DLRVYNVMLR SCLRKGLLEL ADKVLAEMDA LGIGRNRATY EALVDYYGRA GRLNDVWAVI GEMSRDGFGP DSFVYSKVIG VYRDNGMWKK
201: AMEIVREIRE MGVSLDKRIY NSIIDTFGKC GELSEALEVF EKMQEEGVKP DIMTWNSLIQ WHCKAGDVGK ALELFSKMQE EGLYPDPKIF ITIISRLGEQ
301: GKWDVIKRNF ENMKCRGHQR SGAIYAILVD IYGQYGRFQG PEECISALKS EGIQPSASMF CVLANAYAQQ GLCEQTVKVL QLMETEGIEP NLIMLNMLIN
401: AFGIAGRHLE ALSVYHHIKD TGISPDVVTY STLMKACIRA RKFDKVPEIY EEMESAGCTP DRKAREMLQT ALLVLQQRHC KYYFGCISMV

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.