Factsheet for PGSC0003DMT400060882

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	62.5	89.24
VIT_16s0039g02560.t01	Wine grape	cytosol	51.47	57.14
CDY64953	Canola	cytosol	30.33	56.7
GSMUA_Achr1P10690_001	Banana	cytosol	33.64	55.29
AT5G36300.2	Thale cress	cytosol	32.54	53.64
CDX74617	Canola	mitochondrion	33.27	51.57
KRH27783	Soybean	cytosol, plastid	49.08	51.15
Bra035352.1-P	Field mustard	mitochondrion	45.04	50.83
KRH77730	Soybean	plastid	48.16	50.1
TraesCS7A01G407400.1	Wheat	cytosol	39.71	47.26
Os06t0710800-01	Rice	cytosol	41.91	46.34
HORVU0Hr1G007320.4	Barley	cytosol	38.6	45.55
OQU77078	Sorghum	mitochondrion	40.81	44.94
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	41.36	44.12
TraesCS7D01G400900.3	Wheat	cytosol	41.36	43.35
TraesCS7B01G307500.2	Wheat	cytosol	40.99	42.97
Zm00001d014751_P003	Maize	plastid	37.5	38.35
PGSC0003DMT400030453	Potato	mitochondrion	30.51	23.82
PGSC0003DMT400008123	Potato	cytosol, plastid	15.99	18.95
PGSC0003DMT400033331	Potato	plastid	14.34	16.35
PGSC0003DMT400082022	Potato	plastid	13.6	15.16
PGSC0003DMT400022191	Potato	plastid	13.79	14.97
PGSC0003DMT400011734	Potato	plastid	13.05	14.34
PGSC0003DMT400066525	Potato	plastid	21.14	13.97
PGSC0003DMT400041148	Potato	plastid	14.52	13.81
PGSC0003DMT400027006	Potato	cytosol, plastid	14.52	13.72
PGSC0003DMT400010473	Potato	plastid	18.93	12.23
PGSC0003DMT400018827	Potato	cytosol	14.71	10.58
PGSC0003DMT400063174	Potato	plastid	16.54	10.47

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102590662	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1C6L6	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFAM:PF13812	EnsemblPlantsGene:PGSC0003DMG400023682	PGSC:PGSC0003DMG400023682	EnsemblPlants:PGSC0003DMT400060882	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF483	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002949CF7

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023682]

Coordinates

chr10:+:57630618..57635890

Molecular Weight (calculated)

62814.7 Da

IEP (calculated)

7.495

GRAVY (calculated)

-0.149

Length

544 amino acids

Sequence
(BLAST)

001: MQMRQKLLFR SSPAICPHSV CGFVPVCLKH HINPVKHKML HTSCQLILQS RGKRFGFLVN CLNGTIENSN NEHQTCYRND EEISYDLYNE SICELCTEGD
101: VDKAMRLLSE MEALGFHPSF VSYSSLIAAL GSVGRTSEAD AIFQEMLCSS RKPRIKVFNI LLRSFLRKGL LRLADKVLML LDDLAVDRNQ ETYEILLEYY
201: VSAGRLEDTW LIVAKMRRES YPLNSFVYSK IIELYRDNGM WKKALGIVEE IREMGLRLDK RIFNSIIDTF GKYGELGEAL EMFDKMRQEG IKPDFRTWNS
301: LIRWHCKYGH LDTAIELFNE MQDQGLYPDP KIFIIIITHL VEQGRWAVID TILENMQGRG HHKSGAIYAV LVDIYGQHGR FEDAEYCLNS LKLEGLQLSP
401: SIFCVLAHAY AQQGLCEQTV KVLQIMEAEG MEPNLIMLNM LINAFGNAGR HMEAQSIYLH IKEMGITPDV ITYSTLMKAF MRAKKFDQPQ MYFSSSALLL
501: YQQERKAASL KAKRVWYCSC RFHCYNNEVL FRTLMQNLQM TTLN

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.