CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77730	Soybean	plastid	93.49	93.31
VIT_16s0039g02560.t01	Wine grape	cytosol	57.09	60.82
GSMUA_Achr1P10690_001	Banana	cytosol	38.31	60.42
CDY64953	Canola	cytosol	33.52	60.14
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	42.91	58.79
CDX74617	Canola	mitochondrion	35.44	52.71
Os06t0710800-01	Rice	cytosol	49.43	52.44
Bra035352.1-P	Field mustard	mitochondrion	47.7	51.66
AT5G36300.2	Thale cress	cytosol	32.57	51.52
OQU77078	Sorghum	mitochondrion	48.08	50.81
HORVU0Hr1G007320.4	Barley	cytosol	43.68	49.46
TraesCS7A01G407400.1	Wheat	cytosol	43.3	49.45
PGSC0003DMT400060882	Potato	mitochondrion	51.15	49.08
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	47.13	48.24
TraesCS7B01G307500.2	Wheat	cytosol	47.51	47.78
TraesCS7D01G400900.3	Wheat	cytosol	47.32	47.59
Zm00001d014751_P003	Maize	plastid	42.91	42.11
KRH51622	Soybean	cytosol, plastid	35.06	26.29
KRH60945	Soybean	plastid	31.61	24.19
KRH14115	Soybean	plastid	16.09	17.46
KRH46714	Soybean	plastid	16.86	17.09
KRH59429	Soybean	plastid	16.09	16.7
KRH27571	Soybean	plastid	16.86	16.3
KRH02451	Soybean	plastid	15.13	16.19
KRH43291	Soybean	plastid	16.28	16.16
KRH02371	Soybean	plastid	14.94	15.98
KRH57931	Soybean	cytosol	3.26	15.89
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	18.77	15.68
KRH37687	Soybean	plastid	13.6	14.64
KRG91073	Soybean	plastid	22.22	14.61
KRH36131	Soybean	plastid	14.75	13.92
KRG90623	Soybean	nucleus	14.37	13.35
KRH12254	Soybean	plastid	19.73	12.42
KRH37281	Soybean	plastid	19.54	12.29
KRH66918	Soybean	cytosol	15.9	9.92
KRH56998	Soybean	nucleus	15.71	9.56
KRH01436	Soybean	plastid	15.71	9.37
KRH45156	Soybean	plastid	15.52	9.23
KRH03384	Soybean	nucleus	15.13	9.2
KRG95241	Soybean	plastid	11.49	8.81

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100814666	MapMan:35.1	EMBL:ACUP02006733	EnsemblPlantsGene:GLYMA_11G013600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7LMI2	EnsemblPlants:KRH27783	ProteinID:KRH27783	ProteinID:KRH27783.1
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF483	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002969B7D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:-:931876..934501

Molecular Weight (calculated)

59338.2 Da

IEP (calculated)

7.897

GRAVY (calculated)

-0.188

Length

522 amino acids

Sequence
(BLAST)

001: MDIHSVFCSM QISLSYNRGN PLLRFSRAIV IQCSKKHNFL KSPNRWVRNK GVKDVGSEFD SKTKSIKTTL FRSPDIGENE ELSSNLCSQL ICECCKEGDL
101: DRAMSLLSQM EAKGFHLSST SYACLIEALG NVGRTSEADM LFKEMVCYGY KPKLNLYHSL LRGFLKKGLL GLANGVLKEM DDLGIWRSKE TYQIFLDYYV
201: GAGRLEDTWS TINEMKQKGF PLNSFMYSKV VGIYRDNGMW KKAIEVLEEI RERGISLDTH ICNSIIDTFG KYGELDEALK LFKKMQKEGV RPNIVTWNSL
301: IKWHCKEGDF MKAFHLFTDM QEQGLYPDPK IFVTIISCLG EQGKWDIIKK YFESMKIRGN KEYGAVYAVL VDIYGQYGKF QNAGECVQAL KSEGVLVSPS
401: IFCVLANAYA QQGLCEQVIM VLQIMEAEGI EPNIVMLNML INAFGNAGRY MEAISVYHHI KESGVSPDVV TYTTLMKAFI RAKKFDEVPI IYKEMENDGC
501: TPDRKARQML QVALTVLERT NS

Best Arabidopsis Sequence Match ( AT5G36300.2 )
(BLAST)

001: MAPISHTRIS LSMYNSWIRY FCRTGETNEA MSLLAEIHSL GSRPDPLSYV SFIETLASLR RTLEADALFH EVVRFMIYGS YSVRLYNALV SRYLRKEVSW
101: RVVNEMKKRK FRLNSFVYGK IIRIYRDNGM WKKALGIVEE IREIGLPMDV EIYNSVIDTF GKYGELDEEL QVLEKLQRSS DSRPNIRTWN SLIRWHCHHG
201: AVDMALELFT MIFEDIGELV GKLKSQGVAP SANLFCTLAN AYAQQGLCKQ TVKVLKMMEN EGIEPNLIML NVLINAFGTA GKHMEALSIY HHIKETVWIH
301: PDVVTYSTLM KAFTRAKKYE MVCSFYLVTL

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At5g36300 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.