CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57931	Soybean	cytosol	18.51	97.2
KRH36131	Soybean	plastid	93.59	95.12
VIT_12s0028g01140.t01	Wine grape	cytosol	66.37	68.07
CDY06027	Canola	plastid	63.7	67.42
CDX71917	Canola	plastid	64.41	66.42
PGSC0003DMT400041148	Potato	plastid	66.37	65.21
Solyc07g043600.2.1	Tomato	nucleus	65.48	63.45
AT3G59040.2	Thale cress	endoplasmic reticulum	64.41	61.36
Zm00001d024248_P001	Maize	plastid	60.14	56.33
EES13486	Sorghum	plastid	60.32	56.31
TraesCS3A01G523700.1	Wheat	plastid	60.32	55.76
Os08t0191900-01	Rice	plastid	60.32	55.66
TraesCS3D01G529200.1	Wheat	plastid	60.32	55.48
TraesCSU01G054500.1	Wheat	cytosol, plastid	59.96	55.16
HORVU3Hr1G114340.4	Barley	mitochondrion	59.96	53.15
CDX98345	Canola	cytosol	29.18	52.73
GSMUA_Achr8P07220_001	Banana	cytosol	62.46	32.26
KRH14115	Soybean	plastid	14.95	17.46
KRH02371	Soybean	plastid	14.59	16.8
KRH02451	Soybean	plastid	14.59	16.8
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	18.15	16.32
KRH37687	Soybean	plastid	14.06	16.29
KRH46714	Soybean	plastid	14.41	15.73
KRH60945	Soybean	plastid	18.68	15.4
KRH51622	Soybean	cytosol, plastid	19.04	15.37
KRH59429	Soybean	plastid	13.17	14.71
KRH27783	Soybean	cytosol, plastid	13.35	14.37
KRH77730	Soybean	plastid	12.99	13.96
KRH43291	Soybean	plastid	12.99	13.88
KRH27571	Soybean	plastid	13.17	13.7
KRG91073	Soybean	plastid	18.33	12.97
KRH12254	Soybean	plastid	18.51	12.55
KRH37281	Soybean	plastid	17.79	12.05
KRH66918	Soybean	cytosol	17.44	11.71
KRH01436	Soybean	plastid	17.97	11.54
KRG95241	Soybean	plastid	13.88	11.45
KRH45156	Soybean	plastid	17.79	11.39
KRH03384	Soybean	nucleus	17.26	11.29
KRH56998	Soybean	nucleus	16.9	11.07

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100786343	MapMan:16.12.4.6	EMBL:ACUP02012628	EnsemblPlantsGene:GLYMA_20G103800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1NF60	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRG90623	ProteinID:KRG90623	ProteinID:KRG90623.1
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF722
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233DB25	SEG:seg

Description

hypothetical protein

Coordinates

chr20:+:34641764..34645964

Molecular Weight (calculated)

64775.8 Da

IEP (calculated)

6.316

GRAVY (calculated)

-0.481

Length

562 amino acids

Sequence
(BLAST)

001: MCSLISKSHC HLRQQLPLQP TRTGNGIARV RMSGRMEVVC RGMLKPRKFM QRRRKFEVFK DSADEADQKN WRRIMTEIEE SGSAVSVLSA EKINNQNIPK
101: DLVVGTLIRF KQLKKWNLVV EILEWLRTQN WWDFGKMDFF MLITAYGKLG DFNGAEKVLG LMNKNGYAPN VVSQTALMEA YGKGGRYNNA EAIFRRMQKW
201: GPEPSAFTYQ IILKTFVQGN KFREAEELFD NLLNDENSPL KPDQKMFNMM IYMHKKAGSY EKARKTFAQM AELGIQQTTV TYNSLMSFET NYKEVSNIYD
301: QMQRADLRPD VVSYALLVSA YGKARREEEA LAVFEEMLDA GIRPTRKAYN ILLDAFSISG MVEQAQTVFK SMRRDRYFPD LCSYTTMLSA YINADDMEGA
401: EKFFKRLIQD GFEPNVVTYG TLIKGYAKIN DLEMVMKKYE EMLMRGIKAN QTILTTIMDA YGKSGDFDSA VHWFKEMESN GIPPDQKAKN VLLSLAKTDE
501: EREEANELVV HFSENSSLPK VNGIVKLVDE DEEEDNYEYF DAQLARAYEH STEVKVDECQ VL

Best Arabidopsis Sequence Match ( AT3G59040.1 )
(BLAST)

001: MSQAVIFKPF VSVPSSNHSQ RKLQNNIINV GVKIQNRFRV VCMGMLAPRK FLQKRRKMEV FKDAADETDQ KRWRGLMLEI ESTGSAVPVL RQYKTDGDQG
101: LPRDLVLGTL VRFKQLKKWN LVSEILEWLR YQNWWNFSEI DFLMLITAYG KLGNFNGAER VLSVLSKMGS TPNVISYTAL MESYGRGGKC NNAEAIFRRM
201: QSSGPEPSAI TYQIILKTFV EGDKFKEAEE VFETLLDEKK SPLKPDQKMY HMMIYMYKKA GNYEKARKVF SSMVGKGVPQ STVTYNSLMS FETSYKEVSK
301: IYDQMQRSDI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA ISGMVEQAKT VFKSMRRDRI FPDLWSYTTM LSAYVNASDM
401: EGAEKFFKRI KVDGFEPNIV TYGTLIKGYA KANDVEKMME VYEKMRLSGI KANQTILTTI MDASGRCKNF GSALGWYKEM ESCGVPPDQK AKNVLLSLAS
501: TQDELEEAKE LTGIRNETAT IIARVYGSDD DEEGVEDISS ESSDDEDEGD DDDDDARETV LYDKPQEGSL GYGSLQTEEL VGL

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J741]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.