CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024248_P001	Maize	plastid	92.03	92.33
Os08t0191900-01	Rice	plastid	85.22	84.24
TraesCS3A01G523700.1	Wheat	plastid	81.06	80.26
TraesCSU01G054500.1	Wheat	cytosol, plastid	81.23	80.03
TraesCS3D01G529200.1	Wheat	plastid	81.06	79.87
HORVU3Hr1G114340.4	Barley	mitochondrion	80.07	76.03
VIT_12s0028g01140.t01	Wine grape	cytosol	58.47	64.23
CDY06027	Canola	plastid	55.81	63.28
PGSC0003DMT400041148	Potato	plastid	59.8	62.94
Solyc07g043600.2.1	Tomato	nucleus	60.3	62.59
CDX71917	Canola	plastid	56.15	62.02
KRH36131	Soybean	plastid	56.81	61.84
KRG90623	Soybean	nucleus	56.31	60.32
AT3G59040.2	Thale cress	endoplasmic reticulum	56.31	57.46
CDX98345	Canola	cytosol	25.58	49.52
GSMUA_Achr8P07220_001	Banana	cytosol	70.6	39.06
KXG40345	Sorghum	plastid	15.28	18.93
OQU86802	Sorghum	cytosol	9.63	18.77
EER87934	Sorghum	plastid	14.62	17.89
KXG30749	Sorghum	plastid	13.95	16.87
OQU77078	Sorghum	mitochondrion	13.46	16.4
OQU84443	Sorghum	cytosol	16.45	16.36
EER99505	Sorghum	plastid	17.77	16.02
EER97871	Sorghum	plastid	14.29	15.36
KXG36606	Sorghum	plastid	18.11	14.1
KXG20531	Sorghum	plastid	16.61	12.89
KXG36530	Sorghum	plastid	15.28	11.23
EES16159	Sorghum	plastid	14.95	10.32
OQU90703	Sorghum	plastid	14.95	10.03

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.6	EntrezGene:8071143	UniProt:C5YIC9	EnsemblPlants:EES13486	ProteinID:EES13486
ProteinID:EES13486.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF722	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3007G069400	SUPFAM:SSF48452	unigene:Sbi.12819
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A87515	RefSeq:XP_002443991.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:7710790..7715666

Molecular Weight (calculated)

69223.5 Da

IEP (calculated)

6.297

GRAVY (calculated)

-0.613

Length

602 amino acids

Sequence
(BLAST)

001: MESAAIGSQS PLSFPSSLCK AKVSSGLPIY NVKIKSNHRL EVVCRGMLAT RKFMQRKKKE EVFKDAADEA EQMNWRRMMR EIEEAGSAVP ILKTQRSGKG
101: PLPRDVILGT LVRFKQLKKW NIVSEILEWL RTQHWWDFSE MDFLMLVTAY GKLGDFSRAE RVLKYMNKKG YQPSVISQTG LMEAYGRGKQ YRKAEAVFRR
201: MQTSGPEPSP VTYQIILKSL VEGDKYKEAE AIFEDLLNEK RTSFKPDQKM FHMMIYMYKK AGDYAQARKL FAQMSERKIP LSTVTFNSLM SFETDYKEVS
301: SIYDQMQRAG MKPDVVSYSL LIKAYGKARR EEEALAVFEE MLDAGVRPTR KSYNILLDAF AISGLVDEAN TVFKAMRRHR VEPDLCSYTT MVLAYVNASD
401: MNGAEKFFRR IKDDGLKPNV VVYGTLMKGY SKLNNVEKVM RVYERMRIQG VEPNQTIYTT IMDAHGRNSD FGNAVIWFKE MEARGYPPDQ KAKNILLSLA
501: NTPEEQQEAN ELVGNGAIQL EVKPDNEEVD DDGHEVIHTD AGSHRLLDDT QTRNHVNGRI RAGNYTFDED DNDDDDDDYE EEDDEEFNFV SFKDKRELNF
601: AS

Best Arabidopsis Sequence Match ( AT3G59040.2 )
(BLAST)

001: MFFSFRLLKV LVFHLQIRPC VLLCVSQRKL QNNIINVGVK IQNRFRVVCM GMLAPRKFLQ KRRKMEVFKD AADETDQKRW RGLMLEIEST GSAVPVLRQY
101: KTDGDQGLPR DLVLGTLVRF KQLKKWNLVS EILEWLRYQN WWNFSEIDFL MLITAYGKLG NFNGAERVLS VLSKMGSTPN VISYTALMES YGRGGKCNNA
201: EAIFRRMQSS GPEPSAITYQ IILKTFVEGD KFKEAEEVFE TLLDEKKSPL KPDQKMYHMM IYMYKKAGNY EKARKVFSSM VGKGVPQSTV TYNSLMSFET
301: SYKEVSKIYD QMQRSDIQPD VVSYALLIKA YGRARREEEA LSVFEEMLDA GVRPTHKAYN ILLDAFAISG MVEQAKTVFK SMRRDRIFPD LWSYTTMLSA
401: YVNASDMEGA EKFFKRIKVD GFEPNIVTYG TLIKGYAKAN DVEKMMEVYE KMRLSGIKAN QTILTTIMDA SGRCKNFGSA LGWYKEMESC GVPPDQKAKN
501: VLLSLASTQD ELEEAKELTG IRNETATIIA RVYGSDDDEE GVEDISSESS DDEDEGDDDD DDARETVLYD KPQEGSLGYG SLQTEELVGL

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J741]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.