Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 7
- golgi 5
- extracellular 5
- vacuole 4
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06027 | Canola | plastid | 81.19 | 90.21 |
| CDX71917 | Canola | plastid | 80.34 | 86.97 |
| CDX98345 | Canola | cytosol | 35.25 | 66.88 |
| VIT_12s0028g01140.t01 | Wine grape | cytosol | 61.19 | 65.88 |
| PGSC0003DMT400041148 | Potato | plastid | 63.22 | 65.21 |
| KRH36131 | Soybean | plastid | 60.85 | 64.92 |
| Solyc07g043600.2.1 | Tomato | nucleus | 63.39 | 64.48 |
| KRG90623 | Soybean | nucleus | 61.36 | 64.41 |
| EES13486 | Sorghum | plastid | 57.46 | 56.31 |
| Os08t0191900-01 | Rice | plastid | 57.97 | 56.16 |
| TraesCS3A01G523700.1 | Wheat | plastid | 57.63 | 55.92 |
| Zm00001d024248_P001 | Maize | plastid | 56.78 | 55.83 |
| TraesCS3D01G529200.1 | Wheat | plastid | 57.63 | 55.65 |
| TraesCSU01G054500.1 | Wheat | cytosol, plastid | 57.46 | 55.48 |
| HORVU3Hr1G114340.4 | Barley | mitochondrion | 57.12 | 53.15 |
| GSMUA_Achr8P07220_001 | Banana | cytosol | 61.53 | 33.36 |
| AT3G53170.2 | Thale cress | plastid | 15.93 | 18.84 |
| AT5G48730.1 | Thale cress | plastid | 15.42 | 17.91 |
| AT2G35130.2 | Thale cress | endoplasmic reticulum, golgi | 17.97 | 17.29 |
| AT3G06430.1 | Thale cress | plastid | 13.73 | 16.67 |
| AT5G36300.2 | Thale cress | cytosol | 8.64 | 15.45 |
| AT5G42310.1 | Thale cress | plastid | 17.46 | 14.53 |
| AT5G02860.2 | Thale cress | plastid | 19.83 | 14.29 |
| AT2G18940.1 | Thale cress | plastid | 17.63 | 12.65 |
| AT4G39620.1 | Thale cress | plastid | 11.69 | 12.26 |
| AT1G74850.1 | Thale cress | plastid | 16.44 | 11.25 |
| AT2G41720.1 | Thale cress | cytosol, plastid | 15.08 | 10.83 |
| AT2G31400.1 | Thale cress | plastid | 16.44 | 10.57 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:16.12.4.6 | EntrezGene:825073 | ProteinID:AEE79864.1 | ArrayExpress:AT3G59040 | EnsemblPlantsGene:AT3G59040 |
| RefSeq:AT3G59040 | TAIR:AT3G59040 | RefSeq:AT3G59040-TAIR-G | EnsemblPlants:AT3G59040.2 | TAIR:AT3G59040.2 | Unigene:At.46184 |
| ncoils:Coil | UniProt:F4J741 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002885 |
| InterPro:IPR011990 | RefSeq:NP_974457.1 | PFAM:PF01535 | PFAM:PF13041 | PFAM:PF13812 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51375 |
| PANTHER:PTHR24015 | PANTHER:PTHR24015:SF722 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 | SignalP:SignalP-noTM | TIGRFAMs:TIGR00756 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI000034F02D | SEG:seg | : | : | : |
Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J741]
Coordinates
chr3:-:21821349..21824312
Molecular Weight (calculated)
67212.8 Da
IEP (calculated)
5.433
GRAVY (calculated)
-0.386
Length
590 amino acids
Sequence
(BLAST)
(BLAST)
001: MFFSFRLLKV LVFHLQIRPC VLLCVSQRKL QNNIINVGVK IQNRFRVVCM GMLAPRKFLQ KRRKMEVFKD AADETDQKRW RGLMLEIEST GSAVPVLRQY
101: KTDGDQGLPR DLVLGTLVRF KQLKKWNLVS EILEWLRYQN WWNFSEIDFL MLITAYGKLG NFNGAERVLS VLSKMGSTPN VISYTALMES YGRGGKCNNA
201: EAIFRRMQSS GPEPSAITYQ IILKTFVEGD KFKEAEEVFE TLLDEKKSPL KPDQKMYHMM IYMYKKAGNY EKARKVFSSM VGKGVPQSTV TYNSLMSFET
301: SYKEVSKIYD QMQRSDIQPD VVSYALLIKA YGRARREEEA LSVFEEMLDA GVRPTHKAYN ILLDAFAISG MVEQAKTVFK SMRRDRIFPD LWSYTTMLSA
401: YVNASDMEGA EKFFKRIKVD GFEPNIVTYG TLIKGYAKAN DVEKMMEVYE KMRLSGIKAN QTILTTIMDA SGRCKNFGSA LGWYKEMESC GVPPDQKAKN
501: VLLSLASTQD ELEEAKELTG IRNETATIIA RVYGSDDDEE GVEDISSESS DDEDEGDDDD DDARETVLYD KPQEGSLGYG SLQTEELVGL
101: KTDGDQGLPR DLVLGTLVRF KQLKKWNLVS EILEWLRYQN WWNFSEIDFL MLITAYGKLG NFNGAERVLS VLSKMGSTPN VISYTALMES YGRGGKCNNA
201: EAIFRRMQSS GPEPSAITYQ IILKTFVEGD KFKEAEEVFE TLLDEKKSPL KPDQKMYHMM IYMYKKAGNY EKARKVFSSM VGKGVPQSTV TYNSLMSFET
301: SYKEVSKIYD QMQRSDIQPD VVSYALLIKA YGRARREEEA LSVFEEMLDA GVRPTHKAYN ILLDAFAISG MVEQAKTVFK SMRRDRIFPD LWSYTTMLSA
401: YVNASDMEGA EKFFKRIKVD GFEPNIVTYG TLIKGYAKAN DVEKMMEVYE KMRLSGIKAN QTILTTIMDA SGRCKNFGSA LGWYKEMESC GVPPDQKAKN
501: VLLSLASTQD ELEEAKELTG IRNETATIIA RVYGSDDDEE GVEDISSESS DDEDEGDDDD DDARETVLYD KPQEGSLGYG SLQTEELVGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.