Factsheet for AT3G53170.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78150	Canola	plastid	81.36	83.71
CDX73576	Canola	plastid	82.57	82.57
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	80.36	80.36
VIT_13s0064g00400.t01	Wine grape	cytosol	62.53	63.03
KRH14115	Soybean	plastid	58.12	60.29
PGSC0003DMT400008123	Potato	cytosol, plastid	53.71	58.39
Solyc08g045780.2.1	Tomato	cytosol	52.91	57.39
KXG40345	Sorghum	plastid	50.5	51.85
Os03t0115300-00	Rice	plastid	50.1	51.02
Zm00001d027349_P001	Maize	plastid	49.5	50.93
TraesCS4D01G353200.2	Wheat	cytosol	48.7	50.1
OQU86802	Sorghum	cytosol	30.26	48.87
HORVU4Hr1G086600.3	Barley	plastid	48.5	48.79
TraesCS4B01G359900.1	Wheat	plastid	47.7	47.32
TraesCS5A01G528400.1	Wheat	plastid	48.5	45.15
GSMUA_Achr11P...	Banana	endoplasmic reticulum	51.9	38.2
AT5G48730.1	Thale cress	plastid	38.28	37.6
AT3G06430.1	Thale cress	plastid	33.67	34.57
AT4G39620.1	Thale cress	plastid	21.24	18.83
AT3G59040.2	Thale cress	endoplasmic reticulum	18.84	15.93
AT5G36300.2	Thale cress	cytosol	10.42	15.76
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	18.64	15.17
AT5G42310.1	Thale cress	plastid	18.64	13.12
AT5G02860.2	Thale cress	plastid	21.24	12.94
AT2G18940.1	Thale cress	plastid	19.44	11.8
AT2G31400.1	Thale cress	plastid	19.04	10.35
AT1G74850.1	Thale cress	plastid	17.84	10.32
AT2G41720.1	Thale cress	cytosol, plastid	15.63	9.49

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:824483	UniProt:A0A1I9LNX7	ProteinID:ANM64285.1	ArrayExpress:AT3G53170
EnsemblPlantsGene:AT3G53170	RefSeq:AT3G53170	TAIR:AT3G53170	RefSeq:AT3G53170-TAIR-G	EnsemblPlants:AT3G53170.2	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	RefSeq:NP_001319735.1	RefSeq:NP_001326325.1
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF425	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001E92D8E	:	:	:

Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]

Coordinates

chr3:-:19704106..19706530

Molecular Weight (calculated)

56399.8 Da

IEP (calculated)

8.583

GRAVY (calculated)

-0.114

Length

499 amino acids

Sequence
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.