Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
- plasma membrane 1
- nucleus 1
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71198 | Canola | cytosol | 64.96 | 93.99 |
| CDY32056 | Canola | plastid | 90.23 | 91.35 |
| Bra035290.1-P | Field mustard | plastid | 87.55 | 89.62 |
| VIT_03s0091g00440.t01 | Wine grape | plastid | 71.31 | 72.01 |
| KRH27571 | Soybean | plastid | 46.28 | 70.19 |
| GSMUA_Achr6P16830_001 | Banana | cytosol | 47.5 | 69.22 |
| Solyc01g107320.2.1 | Tomato | plastid | 66.91 | 66.91 |
| PGSC0003DMT400066525 | Potato | plastid | 66.18 | 65.86 |
| KRG91073 | Soybean | plastid | 60.93 | 62.85 |
| TraesCS2A01G194800.1 | Wheat | endoplasmic reticulum, extracellular | 32.97 | 58.06 |
| HORVU2Hr1G035060.2 | Barley | cytosol | 42.37 | 55.52 |
| KXG36606 | Sorghum | plastid | 48.35 | 51.23 |
| Os07t0590600-00 | Rice | plastid | 48.84 | 51.02 |
| Zm00001d022003_P001 | Maize | plastid | 47.86 | 49.31 |
| TraesCS2D01G193100.1 | Wheat | plastid | 47.13 | 48.68 |
| TraesCS2B01G212000.1 | Wheat | plastid | 46.89 | 48.3 |
| AT2G18940.1 | Thale cress | plastid | 36.02 | 35.89 |
| AT5G48730.1 | Thale cress | plastid | 13.8 | 22.24 |
| AT5G36300.2 | Thale cress | cytosol | 8.91 | 22.12 |
| AT3G06430.1 | Thale cress | plastid | 12.94 | 21.81 |
| AT5G42310.1 | Thale cress | plastid | 18.68 | 21.58 |
| AT3G53170.2 | Thale cress | plastid | 12.94 | 21.24 |
| AT2G35130.2 | Thale cress | endoplasmic reticulum, golgi | 15.26 | 20.39 |
| AT1G74850.1 | Thale cress | plastid | 20.88 | 19.84 |
| AT3G59040.2 | Thale cress | endoplasmic reticulum | 14.29 | 19.83 |
| AT2G31400.1 | Thale cress | plastid | 21.12 | 18.85 |
| AT2G41720.1 | Thale cress | cytosol, plastid | 17.58 | 17.52 |
| AT4G39620.1 | Thale cress | plastid | 11.48 | 16.7 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:16.12.4.3 | EntrezGene:831761 | UniProt:A0A178UCJ2 | ProteinID:AED90528.1 | ProteinID:ANM70645.1 |
| ProteinID:ANM70646.1 | ProteinID:ANM70647.1 | ProteinID:ANM70648.1 | ArrayExpress:AT5G02860 | EnsemblPlantsGene:AT5G02860 | RefSeq:AT5G02860 |
| TAIR:AT5G02860 | RefSeq:AT5G02860-TAIR-G | EnsemblPlants:AT5G02860.2 | Unigene:At.54692 | ProteinID:CAB86040.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 |
| InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_001332236.1 | RefSeq:NP_001332237.1 | RefSeq:NP_001332238.1 | RefSeq:NP_001332239.1 |
| RefSeq:NP_195906.1 | ProteinID:OAO91518.1 | PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFAM:PF13812 |
| PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF308 | InterPro:Pentatricopeptide_repeat | UniProt:Q9LYZ9 | SUPFAM:SSF81901 |
| TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000AB55F | SEG:seg | : | : |
Description
Pentatricopeptide repeat-containing protein At5g02860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYZ9]
Coordinates
chr5:+:653986..657561
Molecular Weight (calculated)
92087.7 Da
IEP (calculated)
7.776
GRAVY (calculated)
-0.307
Length
819 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.