CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71198	Canola	cytosol	69.22	98.94
Bra035290.1-P	Field mustard	plastid	96.79	97.88
AT5G02860.2	Thale cress	plastid	91.35	90.23
VIT_03s0091g00440.t01	Wine grape	plastid	71.94	71.76
KRH27571	Soybean	plastid	47.34	70.93
GSMUA_Achr6P16830_001	Banana	cytosol	47.84	68.86
Solyc01g107320.2.1	Tomato	plastid	68.23	67.4
PGSC0003DMT400066525	Potato	plastid	67.74	66.59
KRG91073	Soybean	plastid	61.93	63.1
TraesCS2A01G194800.1	Wheat	endoplasmic reticulum, extracellular	33.75	58.71
HORVU2Hr1G035060.2	Barley	cytosol	43.39	56.16
KXG36606	Sorghum	plastid	49.2	51.49
Os07t0590600-00	Rice	plastid	49.2	50.77
Zm00001d022003_P001	Maize	plastid	48.83	49.69
TraesCS2D01G193100.1	Wheat	plastid	48.08	49.05
TraesCS2B01G212000.1	Wheat	plastid	47.84	48.68
CDY56509	Canola	plastid	36.84	36.43
CDY29249	Canola	plastid	36.71	36.35
CDY31603	Canola	plastid	18.54	22.62
CDY06027	Canola	plastid	14.83	22.6
CDX85360	Canola	plastid	14.09	22.57
CDY24692	Canola	plastid	13.23	22.29
CDX86283	Canola	plastid	13.84	22.05
CDY64953	Canola	cytosol	7.91	21.99
CDX71562	Canola	mitochondrion, plastid	18.91	21.89
CDY05264	Canola	plastid	13.1	21.63
CDX71917	Canola	plastid	14.46	21.47
CDX78150	Canola	plastid	12.73	21.24
CDY19091	Canola	cytosol	19.04	21.12
CDX74617	Canola	mitochondrion	9.15	21.08
CDY10802	Canola	plastid	21.76	20.73
CDY56616	Canola	plastid	20.15	20.66
CDX73117	Canola	plastid	21.88	20.51
CDX73576	Canola	plastid	12.61	20.44
CDY45398	Canola	plastid	21.63	20.25
CDY31666	Canola	cytosol	15.33	19.9
CDX84260	Canola	cytosol, nucleus, plastid	15.57	19.6
CDY23832	Canola	plastid	19.28	19.07
CDX79920	Canola	cytosol, plastid	19.16	18.97
CDY41990	Canola	plastid	11.0	18.9
CDY42639	Canola	plastid	11.12	18.63
CDX98345	Canola	cytosol	6.8	17.68
CDY15384	Canola	cytosol	9.02	17.14
CDY52317	Canola	cytosol	0.12	5.88

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.3	UniProt:A0A078H2Q1	EnsemblPlants:CDY32056	ProteinID:CDY32056	ProteinID:CDY32056.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00051368001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF308	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0004EE4668	SEG:seg	:	:	:	:

Description

BnaA07g03960DBnaA07g03960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2Q1]

Coordinates

chrLK032286:+:84038..86867

Molecular Weight (calculated)

91028.8 Da

IEP (calculated)

7.815

GRAVY (calculated)

-0.279

Length

809 amino acids

Sequence
(BLAST)

001: MADKLALPLL LPSTPSPKPL FHDHHQLSRT PFLTSQTPPP SPVEPLLHDV FLHQNPNSRR PITPQTPKTR NRTRIGKSRD PNLGKPWSYH GLSPHGQQIL
101: HSLIESTFDS GQLDPLLSQL SESSSSELLA LLKGLGFHKR FDLALSVFDW FMKQKDYQLD NSVVAVVISM LGKEGRVSSA ANLFNGLIEN GFSLDVYSYT
201: SLISAFANSG RYRDAVMVFK KMEEEGCKPT LITYNVVLNV FGKMGTPWSK ITSLVEKMKS DGIAPDAYTY NTLITCCKRG SLHEEAARVF QEMKMAGFSH
301: DKVTYNALLD VYGKSHRPKE AMKVLNEMEL SGFTPSIVTY NSLISAYARD GMLDEAMELK NQMVGKGMKP DVFTYTTLLS GFERAGKVES AMSVFEEMRN
401: AGCKPNICTF NAFIKMYGNR GKFAEMMKIF DEINVCGLSP DIVTWNTLLA VFGQNGMDSE VSGVFKEMKR AGFVPERETF NTLISAYSRC GSFEQAMTVY
501: RRMLEAGVTP DLSTYNTVLA ALARGGMWEQ SEKVLAEMED GRCKPNELTY CSLLHAYANG KEIGRMHFLA EEVYSGVIEP RAVLLKTLVL VCSKCDLLPE
601: AERAFSELKE RGFSPDITTL NSMVSIYGRR QMVAKANEVL DYMKEMGFTP SMATYNSLMY MHSRSADFGK SEEILREIQA KGIKPDIISY NTVIYAYCRN
701: TRMRDASRIF AEMRDSGIVP DVITYNTFIG SYAADSMFEE AIGVVRYMIK NGCRPNQNTY NSIVDGYCKL NRKDEAKLFA EDLKNLDPHA PKDEEQRLLE
801: RIVKKWPIR

Best Arabidopsis Sequence Match ( AT5G02860.3 )
(BLAST)

001: MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g02860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYZ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.