CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017881.1-P	Field mustard	plastid	99.55	94.29
CDX71562	Canola	mitochondrion, plastid	98.34	93.28
AT5G42310.1	Thale cress	plastid	91.1	85.19
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	71.64	68.35
KRH51622	Soybean	cytosol, plastid	69.98	66.67
PGSC0003DMT400030453	Potato	mitochondrion	69.08	65.71
Solyc08g045850.2.1	Tomato	nucleus	68.78	65.24
KRH60945	Soybean	plastid	66.36	64.52
GSMUA_Achr9P12090_001	Banana	mitochondrion	58.82	56.69
HORVU2Hr1G043170.1	Barley	mitochondrion	52.19	52.34
EER99505	Sorghum	plastid	52.34	51.95
TraesCS2B01G238300.1	Wheat	plastid	52.04	51.57
Zm00001d021716_P001	Maize	plastid	51.73	51.35
Os07t0548300-01	Rice	plastid	46.91	48.22
CDY64953	Canola	cytosol	17.8	40.55
CDX74617	Canola	mitochondrion	19.16	36.18
CDX78150	Canola	plastid	15.84	21.65
CDX73576	Canola	plastid	16.14	21.44
CDX71198	Canola	cytosol	17.95	21.02
CDY06027	Canola	plastid	15.54	19.4
CDY56509	Canola	plastid	23.38	18.95
CDX71917	Canola	plastid	15.54	18.9
CDY29249	Canola	plastid	23.23	18.85
CDY41990	Canola	plastid	13.27	18.68
CDY05264	Canola	plastid	13.73	18.57
CDY32056	Canola	plastid	22.62	18.54
CDY42639	Canola	plastid	13.42	18.43
CDY24692	Canola	plastid	13.27	18.33
CDX85360	Canola	plastid	13.88	18.22
CDX86283	Canola	plastid	13.88	18.11
CDY31666	Canola	cytosol	16.74	17.82
CDY19091	Canola	cytosol	19.0	17.28
CDX84260	Canola	cytosol, nucleus, plastid	16.74	17.26
CDX98345	Canola	cytosol	7.99	17.04
CDY15384	Canola	cytosol	10.71	16.67
CDY56616	Canola	plastid	19.61	16.48
CDX79920	Canola	cytosol, plastid	20.21	16.4
CDY23832	Canola	plastid	20.06	16.26
CDY10802	Canola	plastid	20.81	16.25
CDX73117	Canola	plastid	19.61	15.06
CDY45398	Canola	plastid	19.16	14.7
CDY52317	Canola	cytosol	0.3	11.76

Protein Annotations

EnsemblPlants:CDY31603	EnsemblPlantsGene:GSBRNA2T00050119001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF788
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY31603	ProteinID:CDY31603.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EDB0D3	UniProt:A0A078H457	MapMan:16.12.4.2	:

Description

BnaA03g54490DBnaA03g54490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H457]

Coordinates

chrLK032275:+:193617..196176

Molecular Weight (calculated)

74680.9 Da

IEP (calculated)

8.047

GRAVY (calculated)

-0.199

Length

663 amino acids

Sequence
(BLAST)

001: MLLMQPPLVS SRFHSLYYIP RHHHRFFQRP ISAFSATASC SPSSYFSSWN VELVLDSVNL EPLPAVSLDP VEFELAESYK AVPAPYWHSL LKSLCSSRSS
101: LGLAYAVVSW LERHNLCFSY ELLYSILIHA LGRSEKLYEA FLLSQKQTLT PLTYNALIGA CARNNDIDKA LNLISRMRQD GYQSDFVNYS LVIQALTRSN
201: KIDSALLQSL YREIKHDKLE LDVQLVNDLI MGFAKSGDPS RALQLLGMAQ STGLSAKTAT LVSIISALAN SGRTVEAEAL FEELRQSGIK PRTKAYNALL
301: RGYVKTGPLR DAESMVSEME KSGVSPDEHT YSLLIDAYVN AGRWESARIV LQEMEAGDVQ PNSFVFSRLL AGYRDRGEWQ KTFQVLKEMK SIGVKPDRQF
401: YNVVIDTFGK FNCLDHAMST FDRMLSEGIE PDRVTWNTLI DCHCKHGRHI VAQEMFESME KRGCLPCATT YNIMINSYGD QERWDDMKRL LGKMKSQGVL
501: PNVVTHTTLV DVYGKSGRFN DAIDCLEEMK SVGLKPSSTM YNALINAYAQ RGLSEQAVNA FRVMTSDGLK PSLLALNSLI NAFGEDRRDA EAFAVLQYMK
601: ENGVNPDVVT YTTLMKALIR VDKFQQVPGV YEEMIMSGCK PDRKARSMLR SALRYMKQTL RAS

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.