Factsheet for Zm00001d021716_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99505	Sorghum	plastid	96.86	96.86
TraesCS2B01G238300.1	Wheat	plastid	91.77	91.63
HORVU2Hr1G043170.1	Barley	mitochondrion	90.12	91.07
Os07t0548300-01	Rice	plastid	82.63	85.58
GSMUA_Achr9P12090_001	Banana	mitochondrion	63.17	61.34
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	54.49	52.37
CDY31603	Canola	plastid	51.35	51.73
KRH51622	Soybean	cytosol, plastid	53.14	51.01
CDX71562	Canola	mitochondrion, plastid	52.69	50.36
AT5G42310.1	Thale cress	plastid	53.44	50.35
KRH60945	Soybean	plastid	51.35	50.29
Bra017881.1-P	Field mustard	plastid	52.54	50.14
PGSC0003DMT400030453	Potato	mitochondrion	52.25	50.07
Solyc08g045850.2.1	Tomato	nucleus	52.1	49.79
Zm00001d014751_P003	Maize	plastid	25.15	31.58
Zm00001d036698_P001	Maize	plastid	25.0	21.25
Zm00001d027349_P001	Maize	plastid	14.22	19.59
Zm00001d015377_P003	Maize	plastid	16.92	18.93
Zm00001d037476_P001	Maize	plastid	13.92	18.9
Zm00001d024248_P001	Maize	plastid	16.02	17.83
Zm00001d022003_P001	Maize	plastid	20.81	17.48
Zm00001d052240_P001	Maize	plastid	13.02	17.43
Zm00001d018693_P001	Maize	plastid	14.82	17.34
Zm00001d022599_P002	Maize	plastid	19.76	14.77
Zm00001d021871_P002	Maize	plastid	17.07	14.16
Zm00001d030624_P001	Maize	plastid	17.81	13.68

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.2	EntrezGene:732792	UniProt:A0A1D6IEG9	EMBL:AF073522	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003727	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397
GO:GO:0006412	GO:GO:0006417	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658	GO:GO:0009987	GO:GO:0010239
GO:GO:0016020	GO:GO:0016043	GO:GO:0019538	GO:GO:0042644	GO:GO:0042651	GO:GO:0045727
InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM58112.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812
PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF788	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000221B6D0	EnsemblPlantsGene:Zm00001d021716	EnsemblPlants:Zm00001d021716_P001	EnsemblPlants:Zm00001d021716_T001
SEG:seg	:	:	:	:	:

Description

chloroplast RNA processing1CRP1

Coordinates

chr7:-:161220659..161224485

Molecular Weight (calculated)

73227.4 Da

IEP (calculated)

6.556

GRAVY (calculated)

0.028

Length

668 amino acids

Sequence
(BLAST)

001: MPASLLPPTF LPHHLRRLAP AGCTTSSVTS SSVSIPASRY DFEPLLAYLS SPSVSASLTS PSPPASVPAP EHRLAASYSA VPSHEWHALL RDLAASDASL
101: PLAFALLPFL HRHRLCFPLD LLLSSLLHSL SVSGRLLPHS LLLSFPPSLS DPPSPLLLNS LLAASAAASR PAVALRLLSL LREHDFLPDL ASYSHLLASL
201: LNTRDPPDAA LLERLLGDLR ESRLEPDAPL FSDLISAFAR AALPDAALEL LASAQAIGLT PRSNAVTALI SALGTAGRVA EAEALFLEFF LAGEIKPRTR
301: AYNALLKGYV RIASLKNAEQ VLDEMSQCGV APDEATYSLL VDAYTRAGRW ESARILLKEM EADGVKPSSY VFSRILAGFR DRGDWQKAFA VLREMQASGV
401: RPDRHFYNVM IDTFGKYNCL GHAMDAFNKM REEGIEPDVV TWNTLIDAHC KGGRHDRAAE LFEEMRESNC PPGTTTYNIM INLLGEQEHW EGVEAMLSEM
501: KEQGLVPNII TYTTLVDVYG RSGRYKEAID CIEAMKADGL KPSPTMYHAL VNAYAQRGLA DHALNVVKAM KADGLEVSIL VLNSLINAFG EDRRVVEAFS
601: VLQFMRENGL RPDVITYTTL MKALIRVEQF DKVPVIYEEM ITSGCAPDRK ARAMLRSGLK YIKHMRVA

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.