Factsheet for Zm00001d018693_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003333_P005
Zm00001d003549_P001
Zm00001d003811_P001
Zm00001d005106_P005
Zm00001d005300_P001
Zm00001d005366_P001
Zm00001d005875_P001
Zm00001d006103_P001
Zm00001d006417_P002
Zm00001d010753_P001
Zm00001d013595_P001
Zm00001d016876_P001
Zm00001d017241_P002
Zm00001d018818_P001
Zm00001d019712_P001
Zm00001d019922_P003
Zm00001d020670_P001
Zm00001d021532_P001
Zm00001d025514_P001
Zm00001d025668_P005
Zm00001d031745_P001
Zm00001d032937_P001
Zm00001d042917_P001
Zm00001d043140_P001
Zm00001d044406_P001
Zm00001d044874_P001
Zm00001d050116_P003
Zm00001d051114_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06430.1	Zm00001d006417_P002	AT1G30860.1	21798944
AT3G06430.1	Zm00001d021532_P001	AT1G30860.1	21798944
AT3G06430.1	Zm00001d005300_P001	AT2G23290.1	21798944
AT3G06430.1	Zm00001d019712_P001	AT2G23290.1	21798944
AT3G06430.1	Zm00001d003549_P001	AT3G14180.1	21798944
AT3G06430.1	Zm00001d010753_P001	AT3G14180.1	21798944
AT3G06430.1	Zm00001d016876_P001	AT3G14180.1	21798944
AT3G06430.1	Zm00001d025514_P001	AT3G14180.1	21798944
AT3G06430.1	Zm00001d042917_P001	AT3G14180.1	21798944
AT3G06430.1	Zm00001d013595_P001	AT3G22550.1	21798944
AT3G06430.1	Zm00001d032937_P001	AT3G22550.1	21798944
AT3G06430.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT3G06430.1	Zm00001d052194_P001	AT4G25200.1	21798944
AT3G06430.1	Zm00001d005875_P001	AT5G06710.1	21798944
AT3G06430.1	Zm00001d020670_P001	AT5G06710.1	21798944
AT3G06430.1	Zm00001d031745_P001	AT5G06710.1	21798944
AT3G06430.1	Zm00001d005106_P005	AT5G06780.1	21798944
AT3G06430.1	Zm00001d019922_P003	AT5G06780.1	21798944
AT3G06430.1	Zm00001d050116_P003	AT5G06780.1	21798944
AT3G06430.1	Zm00001d006103_P001	AT5G41070.1	21798944
AT3G06430.1	Zm00001d003333_P005	AT5G56250.1	21798944
AT3G06430.1	Zm00001d025668_P005	AT5G56250.1	21798944
AT3G06430.1	Zm00001d003811_P001	AT5G61380.1	21798944
AT3G06430.1	Zm00001d005366_P001	AT5G61380.1	21798944
AT3G06430.1	Zm00001d017241_P002	AT5G61380.1	21798944
AT3G06430.1	Zm00001d018818_P001	AT5G61380.1	21798944
AT3G06430.1	Zm00001d043140_P001	AT5G61380.1	21798944
AT3G06430.1	Zm00001d044406_P001	AT5G61380.1	21798944
AT3G06430.1	Zm00001d051114_P001	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97871	Sorghum	plastid	87.57	89.29
Os03t0309800-02	Rice	plastid	64.62	73.65
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	65.5	70.97
TraesCS4D01G132900.3	Wheat	plastid	66.2	69.87
TraesCS4A01G178100.5	Wheat	plastid	66.02	69.69
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	66.37	65.57
CDY24692	Canola	plastid	50.96	60.62
KRH02451	Soybean	plastid	51.31	60.04
AT3G06430.1	Thale cress	plastid	50.96	59.88
VIT_05s0020g00690.t01	Wine grape	plastid	52.19	59.84
KRH02371	Soybean	plastid	51.14	59.84
CDY05264	Canola	plastid	51.31	59.8
Bra020748.1-P	Field mustard	plastid	51.14	59.47
GSMUA_Achr11P...	Banana	plastid	55.34	58.2
Solyc12g098990.1.1	Tomato	plastid	48.69	56.16
PGSC0003DMT400011734	Potato	plastid	47.99	55.35
Solyc01g057200.2.1	Tomato	plastid	45.01	54.68
PGSC0003DMT400022191	Potato	plastid	47.11	53.69
KRH37687	Soybean	plastid	41.51	48.87
Zm00001d037476_P001	Maize	plastid	31.0	35.98
Zm00001d027349_P001	Maize	plastid	29.6	34.85
Zm00001d052240_P001	Maize	plastid	18.74	21.44
Zm00001d015377_P003	Maize	plastid	16.46	15.75
Zm00001d021716_P001	Maize	plastid	17.34	14.82
Zm00001d024248_P001	Maize	plastid	15.24	14.5
Zm00001d022003_P001	Maize	plastid	19.96	14.34
Zm00001d036698_P001	Maize	plastid	19.61	14.25
Zm00001d014751_P003	Maize	plastid	12.96	13.91
Zm00001d030624_P001	Maize	plastid	18.21	11.95
Zm00001d021871_P002	Maize	plastid	14.54	10.31
Zm00001d022599_P002	Maize	plastid	15.41	9.84

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100383216	MapMan:35.1	ProteinID:AAP37977.1	EMBL:BT066607	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009553	GO:GO:0009555	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009856	GO:GO:0019843	GO:GO:0048868	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM51131.1
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF301	InterPro:Pentatricopeptide_repeat
UniProt:Q7Y1W6	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000019AF6C	EnsemblPlantsGene:Zm00001d018693	EnsemblPlants:Zm00001d018693_P001
EnsemblPlants:Zm00001d018693_T001	SEG:seg	:	:	:	:

Description

pentatricopeptide repeat 2 pentatricopeptide repeat 2

Coordinates

chr7:-:2686485..2689002

Molecular Weight (calculated)

63294.7 Da

IEP (calculated)

9.030

GRAVY (calculated)

-0.537

Length

571 amino acids

Sequence
(BLAST)

001: MGPPAYTASP CTGSALFSNT RAPPPPPRLL IRWGPGPPSA VGRHGGRVTP SQERRGPAPS QERRRPAPSQ ERRRPTESSS QSHQLQERKR HWKAGEFPGT
101: AADGGGGGGR RPALGNRHSK AGEFPGTDGV RPAPAPPQGK RHWKAGEFPG AAAAPGSGTP RTPLKNVKKR LDARADAKAW ACTVTEALAD RVSSKNWQEA
201: LQVFEMLKEQ PFYHPKEGTY MKLIVLLGRS GQPTRAHQLF DEMLQQGCQP TPELYTALIG AYCRSGLLDE ALQLLNDMKS SPLCQPDVYT YSTIIKACID
301: AARFDLTDAM YKDMAERSIS PNTVTQNIVL SGYGKAGRLD DMERVLSDML DSVSCKPDVW TMNIILSLFG NRGEVELMER WYEKFRGYGV EPETRTLNIL
401: IGAYGKRRMY DKMSAVMEHM RKLAFPWTTA TYNNVIEAFA EAGDAGNMEH AFNQMRSEGM RPDTKTFCCL IDGFSRAGQF HKVVGMVKLA ERLDVPVNTP
501: FHNAVLGACA RADDLVEMER VFRRMKHTQC EPDASTYSIL VEAYRKEGMT DKIYALHQEN PALVPADFVM V

Best Arabidopsis Sequence Match ( AT3G06430.1 )
(BLAST)

001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG

Arabidopsis Description

EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.