Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G290100.2 | Wheat | nucleus | 71.19 | 69.42 |
| TraesCS5B01G289100.1 | Wheat | nucleus | 70.9 | 68.58 |
| TraesCS5D01G297600.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 71.19 | 62.38 |
| Os09t0508500-02 | Rice | nucleus | 51.69 | 45.3 |
| Bra039103.1-P | Field mustard | nucleus | 42.94 | 43.3 |
| CDY12250 | Canola | nucleus | 42.66 | 43.02 |
| AT3G26932.2 | Thale cress | nucleus | 43.5 | 42.9 |
| CDY00177 | Canola | nucleus | 42.09 | 42.33 |
| Bra025523.1-P | Field mustard | nucleus | 42.09 | 40.82 |
| CDY48959 | Canola | nucleus | 42.09 | 40.82 |
| Bra032962.1-P | Field mustard | nucleus | 42.94 | 40.75 |
| CDY34199 | Canola | nucleus | 42.94 | 40.75 |
| CDY28511 | Canola | nucleus | 43.22 | 40.58 |
| AT5G41070.1 | Thale cress | nucleus | 44.07 | 39.69 |
| CDY46403 | Canola | nucleus | 40.96 | 38.46 |
| VIT_14s0068g01520.t01 | Wine grape | nucleus | 48.59 | 35.76 |
| Zm00001d032679_P001 | Maize | nucleus | 44.92 | 30.87 |
| Zm00001d014011_P001 | Maize | mitochondrion, nucleus, plastid | 45.2 | 30.77 |
| Zm00001d024861_P007 | Maize | nucleus | 44.35 | 30.54 |
| Zm00001d022648_P001 | Maize | mitochondrion, nucleus | 16.1 | 23.17 |
| Zm00001d005065_P002 | Maize | cytosol | 18.08 | 14.75 |
| Zm00001d052326_P001 | Maize | cytosol | 13.28 | 13.02 |
| Zm00001d032326_P002 | Maize | cytosol, plastid | 13.28 | 12.98 |
Protein Annotations
| EnsemblPlants:Zm00001d006103_P001 | EnsemblPlants:Zm00001d006103_T001 | EnsemblPlantsGene:Zm00001d006103 | EntrezGene:100274020 | Gene3D:3.30.160.20 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 |
| PANTHER:PTHR10910:SF115 | PFAM:PF00035 | PFscan:PS50137 | ProteinID:ONM22796.1 | SEG:seg | SMART:SM00358 |
| SUPFAM:SSF54768 | UniParc:UPI0001CAA226 | UniProt:A0A1D6ESW2 | MapMan:35.1 | : | : |
Description
Double-stranded RNA-binding protein 3
Coordinates
chr2:+:198177578..198179576
Molecular Weight (calculated)
37439.5 Da
IEP (calculated)
10.292
GRAVY (calculated)
-0.462
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKNQLQELA QRSCFSLPSY VCTREGPDHA PRFRAAVTFN GETFEGPSGC TTLRQAEHAA AEVALARLSL RGPSTTLAAR VLDETGVYKN LLQETAHRAG
101: LKLPAYTTVR SGPGHSPVFS STVELAGLSF AGDPARTKKQ AEKNAAMAAW SSLKQMPEAR KEPGAGDEQE HVAVARALAA LKPRDGGDGK AAPPLQKHSS
201: NGSSSSALPN PSLYRHQWRP RTSTPAQAQP LPPRTGALPL QPPAGPRILP PLHLLQRPAC GSRDAAAAEL VRMLERAMVR DREATPPSPC YYAAPAASAY
301: RHGSAPRTFA AGGFHAPAVS VRSVIPVCAA PPPQTPVKEE RNGPATPSGA CKRA
101: LKLPAYTTVR SGPGHSPVFS STVELAGLSF AGDPARTKKQ AEKNAAMAAW SSLKQMPEAR KEPGAGDEQE HVAVARALAA LKPRDGGDGK AAPPLQKHSS
201: NGSSSSALPN PSLYRHQWRP RTSTPAQAQP LPPRTGALPL QPPAGPRILP PLHLLQRPAC GSRDAAAAEL VRMLERAMVR DREATPPSPC YYAAPAASAY
301: RHGSAPRTFA AGGFHAPAVS VRSVIPVCAA PPPQTPVKEE RNGPATPSGA CKRA
001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN
Arabidopsis Description
DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.