CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032962.1-P	Field mustard	nucleus	93.37	94.37
CDY34199	Canola	nucleus	93.37	94.37
CDY12250	Canola	nucleus	76.13	81.77
CDY00177	Canola	nucleus	75.07	80.4
AT3G26932.2	Thale cress	nucleus	75.33	79.11
CDY48959	Canola	nucleus	53.58	55.34
CDY46403	Canola	nucleus	53.58	53.58
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	40.58	43.22
TraesCS5A01G290100.2	Wheat	nucleus	41.11	42.7
TraesCS5B01G289100.1	Wheat	nucleus	40.58	41.8
TraesCS5D01G297600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	41.38	38.61
VIT_14s0068g01520.t01	Wine grape	nucleus	47.48	37.21
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	40.32	35.35
Os09t0508500-02	Rice	nucleus	37.67	35.15
CDY15737	Canola	cytosol	40.32	35.1
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	40.32	35.1
CDY30490	Canola	nucleus	40.32	35.02
CDY11449	Canola	nucleus	23.34	26.59
CDX76663	Canola	cytosol	23.08	25.97
CDX93488	Canola	plastid	17.77	24.36
CDX94957	Canola	cytosol, nucleus, plastid	17.77	23.67
CDY20678	Canola	cytosol	16.71	22.74
CDY31070	Canola	endoplasmic reticulum, golgi	16.71	19.63

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	UniProt:A0A078GSP1	EnsemblPlants:CDY28511	ProteinID:CDY28511	ProteinID:CDY28511.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00040420001	InterPro:IPR014720
PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR10910	PANTHER:PTHR10910:SF115	SMART:SM00358	SUPFAM:SSF54768
UniParc:UPI0004EE6CAE	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

BnaC02g36490DBnaC02g36490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSP1]

Coordinates

chrLK032221:+:307247..309734

Molecular Weight (calculated)

42196.3 Da

IEP (calculated)

10.147

GRAVY (calculated)

-0.718

Length

377 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKATVNFN GEIFESPTHC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHVPTFS CTVELAGMRF NGESAKTKKQ AEKNAAIAAW FSLRKMPTSL DSERGEEKER EVVARVLSRF RPKEVRRREQ NQSRRRAIRQ
201: DTRDMLCEKL RMINPYTNES STSLKHQQTL PPRLWPSTTN LQQQSKVKSL LEKSQEHAGL KQRSPDDAKP EMIIKSFPLS LSSSSMERRN CYSKLLPFPE
301: RFAGGFGLNH QKLAPAVHMR SVIPVCSAPP PKPPSPFNES NTSLSSCSAP MSLGIKGQEK KSLIELELES KSDRTHD

Best Arabidopsis Sequence Match ( AT3G26932.2 )
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN

Arabidopsis Description

DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.