Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032962.1-P | Field mustard | nucleus | 78.27 | 75.34 |
| CDY34199 | Canola | nucleus | 78.27 | 75.34 |
| CDY28511 | Canola | nucleus | 79.11 | 75.33 |
| Bra039103.1-P | Field mustard | nucleus | 72.7 | 74.36 |
| CDY12250 | Canola | nucleus | 72.14 | 73.79 |
| CDY00177 | Canola | nucleus | 71.87 | 73.3 |
| AT5G41070.1 | Thale cress | nucleus | 60.45 | 55.22 |
| Zm00001d006103_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 42.9 | 43.5 |
| TraesCS5A01G290100.2 | Wheat | nucleus | 43.18 | 42.7 |
| TraesCS5B01G289100.1 | Wheat | nucleus | 42.9 | 42.08 |
| TraesCS5D01G297600.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 43.18 | 38.37 |
| VIT_14s0068g01520.t01 | Wine grape | nucleus | 49.3 | 36.8 |
| AT2G28380.1 | Thale cress | cytosol | 42.62 | 35.25 |
| Os09t0508500-02 | Rice | nucleus | 39.28 | 34.9 |
| AT3G62800.1 | Thale cress | nucleus | 23.12 | 23.38 |
| AT1G09700.1 | Thale cress | plastid | 18.38 | 15.75 |
Protein Annotations
| Gene3D:3.30.160.20 | MapMan:35.1 | EntrezGene:822310 | ProteinID:AEE77245.1 | ProteinID:AEE77246.1 | EMBL:AK222128 |
| ArrayExpress:AT3G26932 | EnsemblPlantsGene:AT3G26932 | RefSeq:AT3G26932 | TAIR:AT3G26932 | RefSeq:AT3G26932-TAIR-G | EnsemblPlants:AT3G26932.2 |
| TAIR:AT3G26932.2 | ProteinID:BAB01188.1 | EMBL:BT012284 | ncoils:Coil | Symbol:DRB3 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR014720 |
| RefSeq:NP_001030779.2 | RefSeq:NP_189329.3 | PFAM:PF00035 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS50137 |
| PANTHER:PTHR10910 | PANTHER:PTHR10910:SF115 | UniProt:Q9LJF5 | SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI00000A35A1 |
| InterPro:dsRBD_dom | SEG:seg | : | : | : | : |
Description
DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
Coordinates
chr3:-:9929996..9932249
Molecular Weight (calculated)
40075.6 Da
IEP (calculated)
10.225
GRAVY (calculated)
-0.708
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.