Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019999.1-P | Field mustard | plastid | 51.55 | 78.83 |
| CDY20678 | Canola | cytosol | 51.79 | 78.34 |
| Bra030793.1-P | Field mustard | cytosol | 51.55 | 77.7 |
| CDX93488 | Canola | plastid | 50.6 | 77.09 |
| CDX94957 | Canola | cytosol, nucleus, plastid | 49.16 | 72.79 |
| CDY31070 | Canola | endoplasmic reticulum, golgi | 52.27 | 68.22 |
| KRH62246 | Soybean | nucleus | 38.19 | 44.57 |
| KRH52961 | Soybean | nucleus | 37.23 | 42.98 |
| VIT_18s0001g07670.t01 | Wine grape | nucleus | 38.42 | 40.25 |
| OQU82704 | Sorghum | cytosol, nucleus | 28.88 | 36.78 |
| GSMUA_Achr11P... | Banana | nucleus | 31.74 | 35.56 |
| PGSC0003DMT400024215 | Potato | cytosol, nucleus, plastid | 33.41 | 34.48 |
| Solyc04g076420.2.1 | Tomato | cytosol, nucleus, plastid | 33.17 | 32.1 |
| Os05t0307400-01 | Rice | cytosol | 32.46 | 31.12 |
| KXG22802 | Sorghum | mitochondrion | 31.98 | 31.02 |
| Zm00001d005065_P002 | Maize | cytosol | 31.5 | 30.41 |
| GSMUA_Achr8P16450_001 | Banana | endoplasmic reticulum, golgi, vacuole | 26.01 | 30.28 |
| Os11t0109900-01 | Rice | cytosol | 33.17 | 29.39 |
| TraesCS4A01G180400.1 | Wheat | cytosol | 27.68 | 28.5 |
| TraesCS4D01G132400.1 | Wheat | cytosol | 27.68 | 28.43 |
| HORVU4Hr1G024480.3 | Barley | cytosol, nucleus | 26.97 | 27.7 |
| TraesCS5D01G143500.2 | Wheat | nucleus | 31.98 | 25.38 |
| TraesCS5B01G148100.2 | Wheat | nucleus | 31.5 | 24.91 |
| TraesCS5A01G149400.2 | Wheat | mitochondrion | 31.98 | 24.1 |
| HORVU5Hr1G047100.5 | Barley | nucleus | 31.98 | 23.39 |
| AT3G62800.1 | Thale cress | nucleus | 15.75 | 18.59 |
| AT3G26932.2 | Thale cress | nucleus | 15.75 | 18.38 |
| AT5G41070.1 | Thale cress | nucleus | 15.04 | 16.03 |
| AT2G28380.1 | Thale cress | cytosol | 16.47 | 15.9 |
| Os12t0109900-02 | Rice | cytosol | 14.08 | 12.77 |
Protein Annotations
| MapMan:16.10.2.1.2 | PDB:2L2M | PDB:2L2N | Gene3D:3.30.160.20 | PDB:3ADG | PDB:3ADI |
| PDB:3ADJ | EntrezGene:837498 | ProteinID:AAB60726.1 | ProteinID:AEE28481.1 | EMBL:AF276440 | EMBL:AK319123 |
| ArrayExpress:AT1G09700 | EnsemblPlantsGene:AT1G09700 | RefSeq:AT1G09700 | TAIR:AT1G09700 | RefSeq:AT1G09700-TAIR-G | EnsemblPlants:AT1G09700.1 |
| TAIR:AT1G09700.1 | EMBL:AY054631 | EMBL:AY081525 | Unigene:At.10223 | InterPro:DRB | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003725 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009735 | GO:GO:0009737 | GO:GO:0009987 |
| GO:GO:0010267 | GO:GO:0010305 | GO:GO:0010445 | GO:GO:0010589 | GO:GO:0016607 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0031047 | GO:GO:0031053 | GO:GO:0031054 | GO:GO:0035196 | GO:GO:0035198 |
| GO:GO:0035279 | GO:GO:0040029 | GO:GO:0042802 | GO:GO:0090502 | Symbol:HYL1 | InterPro:IPR014720 |
| RefSeq:NP_563850.1 | UniProt:O04492 | PFAM:PF00035 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50137 | PANTHER:PTHR11207 |
| PANTHER:PTHR11207:SF1 | SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI00000A6CE8 | InterPro:dsRBD_dom | SEG:seg |
Description
DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
Coordinates
chr1:-:3137649..3140353
Molecular Weight (calculated)
45549.0 Da
IEP (calculated)
5.420
GRAVY (calculated)
-0.498
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.