Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra007702.1-P | Field mustard | nucleus | 62.54 | 67.27 |
CDX76663 | Canola | cytosol | 63.1 | 66.87 |
CDY11449 | Canola | nucleus | 61.97 | 66.47 |
VIT_08s0056g01550.t01 | Wine grape | plastid | 23.94 | 51.2 |
Solyc01g056620.2.1 | Tomato | mitochondrion, nucleus | 30.14 | 37.15 |
EES16051 | Sorghum | cytosol | 17.46 | 31.31 |
EER88251 | Sorghum | cytosol, mitochondrion, nucleus | 17.46 | 25.51 |
AT3G26932.2 | Thale cress | nucleus | 23.38 | 23.12 |
Zm00001d022648_P001 | Maize | mitochondrion, nucleus | 15.21 | 21.95 |
Os01t0772000-01 | Rice | mitochondrion, nucleus | 27.04 | 21.77 |
KRH57881 | Soybean | nucleus | 30.7 | 21.63 |
AT5G41070.1 | Thale cress | nucleus | 22.25 | 20.1 |
AT2G28380.1 | Thale cress | cytosol | 23.94 | 19.59 |
TraesCS3A01G527500.1 | Wheat | mitochondrion, nucleus | 9.58 | 19.32 |
KXG33474 | Sorghum | mitochondrion | 25.07 | 17.66 |
AT1G09700.1 | Thale cress | plastid | 18.59 | 15.75 |
HORVU3Hr1G075340.1 | Barley | mitochondrion | 24.79 | 15.41 |
TraesCS3B01G341600.1 | Wheat | mitochondrion, nucleus | 23.38 | 15.23 |
TraesCS3D01G307700.5 | Wheat | mitochondrion, nucleus | 24.79 | 14.52 |
TraesCS3A01G295400.2 | Wheat | nucleus | 23.94 | 14.0 |
TraesCS3B01G341800.9 | Wheat | mitochondrion, nucleus | 23.66 | 13.86 |
TraesCS3B01G341700.4 | Wheat | mitochondrion, nucleus | 23.1 | 13.53 |
Protein Annotations
MapMan:16.10.1.4.1 | PDB:2N3F | PDB:2N3G | PDB:2N3H | Gene3D:3.30.160.20 | EntrezGene:825455 |
EMBL:AB455097 | ProteinID:AEE80393.1 | ProteinID:AEE80394.1 | ProteinID:AEE80395.1 | ArrayExpress:AT3G62800 | EnsemblPlantsGene:AT3G62800 |
RefSeq:AT3G62800 | TAIR:AT3G62800 | RefSeq:AT3G62800-TAIR-G | EnsemblPlants:AT3G62800.1 | TAIR:AT3G62800.1 | EMBL:AY074363 |
EMBL:AY150509 | Unigene:At.34049 | ProteinID:CAB83130.1 | Symbol:DRB4 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003723 | GO:GO:0003725 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006950 | GO:GO:0006952 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 |
GO:GO:0010267 | GO:GO:0016032 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0031047 | GO:GO:0035196 |
GO:GO:0040029 | GO:GO:0051607 | GO:GO:0060145 | GO:GO:0070919 | InterPro:IPR014720 | RefSeq:NP_001154686.1 |
RefSeq:NP_191839.2 | RefSeq:NP_974480.1 | PFAM:PF00035 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50137 | PANTHER:PTHR10910 | PANTHER:PTHR10910:SF115 | UniProt:Q8H1D4 |
SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI00000ADA9F | InterPro:dsRBD_dom | : | : |
Description
DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
Coordinates
chr3:-:23225526..23227512
Molecular Weight (calculated)
38418.1 Da
IEP (calculated)
6.001
GRAVY (calculated)
-0.483
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.