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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007702.1-P Field mustard nucleus 62.54 67.27
CDX76663 Canola cytosol 63.1 66.87
CDY11449 Canola nucleus 61.97 66.47
VIT_08s0056g01550.t01 Wine grape plastid 23.94 51.2
Solyc01g056620.2.1 Tomato mitochondrion, nucleus 30.14 37.15
EES16051 Sorghum cytosol 17.46 31.31
EER88251 Sorghum cytosol, mitochondrion, nucleus 17.46 25.51
AT3G26932.2 Thale cress nucleus 23.38 23.12
Zm00001d022648_P001 Maize mitochondrion, nucleus 15.21 21.95
Os01t0772000-01 Rice mitochondrion, nucleus 27.04 21.77
KRH57881 Soybean nucleus 30.7 21.63
AT5G41070.1 Thale cress nucleus 22.25 20.1
AT2G28380.1 Thale cress cytosol 23.94 19.59
TraesCS3A01G527500.1 Wheat mitochondrion, nucleus 9.58 19.32
KXG33474 Sorghum mitochondrion 25.07 17.66
AT1G09700.1 Thale cress plastid 18.59 15.75
HORVU3Hr1G075340.1 Barley mitochondrion 24.79 15.41
TraesCS3B01G341600.1 Wheat mitochondrion, nucleus 23.38 15.23
TraesCS3D01G307700.5 Wheat mitochondrion, nucleus 24.79 14.52
TraesCS3A01G295400.2 Wheat nucleus 23.94 14.0
TraesCS3B01G341800.9 Wheat mitochondrion, nucleus 23.66 13.86
TraesCS3B01G341700.4 Wheat mitochondrion, nucleus 23.1 13.53
Protein Annotations
MapMan:16.10.1.4.1PDB:2N3FPDB:2N3GPDB:2N3HGene3D:3.30.160.20EntrezGene:825455
EMBL:AB455097ProteinID:AEE80393.1ProteinID:AEE80394.1ProteinID:AEE80395.1ArrayExpress:AT3G62800EnsemblPlantsGene:AT3G62800
RefSeq:AT3G62800TAIR:AT3G62800RefSeq:AT3G62800-TAIR-GEnsemblPlants:AT3G62800.1TAIR:AT3G62800.1EMBL:AY074363
EMBL:AY150509Unigene:At.34049ProteinID:CAB83130.1Symbol:DRB4GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003725GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006412GO:GO:0006950GO:GO:0006952
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009605GO:GO:0009607GO:GO:0009987
GO:GO:0010267GO:GO:0016032GO:GO:0016043GO:GO:0019538GO:GO:0031047GO:GO:0035196
GO:GO:0040029GO:GO:0051607GO:GO:0060145GO:GO:0070919InterPro:IPR014720RefSeq:NP_001154686.1
RefSeq:NP_191839.2RefSeq:NP_974480.1PFAM:PF00035PO:PO:0000005PO:PO:0000013PO:PO:0000037
PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025195PO:PO:0025281PFscan:PS50137PANTHER:PTHR10910PANTHER:PTHR10910:SF115UniProt:Q8H1D4
SMART:SM00358SUPFAM:SSF54768UniParc:UPI00000ADA9FInterPro:dsRBD_dom::
Description
DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
Coordinates
chr3:-:23225526..23227512
Molecular Weight (calculated)
38418.1 Da
IEP (calculated)
6.001
GRAVY (calculated)
-0.483
Length
355 amino acids
Sequence
(BLAST)
001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.