Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra007702.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G62800.1 | Bra007702.1-P | AT3G62800.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11449 | Canola | nucleus | 96.97 | 96.68 |
| AT3G62800.1 | Thale cress | nucleus | 67.27 | 62.54 |
| VIT_08s0056g01550.t01 | Wine grape | plastid | 26.06 | 51.81 |
| Solyc01g056620.2.1 | Tomato | mitochondrion, nucleus | 32.42 | 37.15 |
| EES16051 | Sorghum | cytosol | 20.0 | 33.33 |
| EER88251 | Sorghum | cytosol, mitochondrion, nucleus | 20.0 | 27.16 |
| Bra039103.1-P | Field mustard | nucleus | 25.76 | 24.22 |
| Zm00001d022648_P001 | Maize | mitochondrion, nucleus | 17.88 | 23.98 |
| Bra032962.1-P | Field mustard | nucleus | 26.67 | 23.59 |
| Bra019999.1-P | Field mustard | plastid | 19.39 | 23.36 |
| Bra025523.1-P | Field mustard | nucleus | 25.76 | 23.29 |
| Os01t0772000-01 | Rice | mitochondrion, nucleus | 30.3 | 22.68 |
| Bra030793.1-P | Field mustard | cytosol | 19.09 | 22.66 |
| Bra035704.1-P | Field mustard | nucleus | 28.48 | 21.71 |
| Bra011953.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 27.88 | 21.4 |
| KRH57881 | Soybean | nucleus | 31.21 | 20.44 |
| TraesCS3A01G527500.1 | Wheat | mitochondrion, nucleus | 10.61 | 19.89 |
| KXG33474 | Sorghum | mitochondrion | 29.09 | 19.05 |
| TraesCS3B01G341600.1 | Wheat | mitochondrion, nucleus | 25.76 | 15.6 |
| HORVU3Hr1G075340.1 | Barley | mitochondrion | 26.97 | 15.59 |
| TraesCS3D01G307700.5 | Wheat | mitochondrion, nucleus | 26.67 | 14.52 |
| TraesCS3A01G295400.2 | Wheat | nucleus | 26.67 | 14.5 |
| TraesCS3B01G341800.9 | Wheat | mitochondrion, nucleus | 26.36 | 14.36 |
| TraesCS3B01G341700.4 | Wheat | mitochondrion, nucleus | 26.06 | 14.19 |
Protein Annotations
| Gene3D:3.30.160.20 | MapMan:35.1 | EnsemblPlantsGene:Bra007702 | EnsemblPlants:Bra007702.1 | EnsemblPlants:Bra007702.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003725 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0010267 |
| GO:GO:0016043 | GO:GO:0019538 | GO:GO:0035196 | GO:GO:0040029 | GO:GO:0051607 | GO:GO:0060145 |
| GO:GO:0070919 | InterPro:IPR014720 | UniProt:M4CU08 | PFAM:PF00035 | PFscan:PS50137 | PANTHER:PTHR10910 |
| PANTHER:PTHR10910:SF114 | SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI0002542B36 | InterPro:dsRBD_dom | SEG:seg |
Description
AT3G62800 (E=3e-102) | DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA binding / protein binding
Coordinates
chrA09:-:30461453..30462922
Molecular Weight (calculated)
35807.1 Da
IEP (calculated)
5.869
GRAVY (calculated)
-0.452
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHMYKSQLQ SYALKQNMEL PVYAAERQGP AHAPRFRCKV TVCGQTFQSQ EFCPTLKAAE HAAAKVALAS LTPLNPEASS HSFWTGVVVD VAYKNLLQEI
101: AQKENSLLPV YGTSTSGPSH APTFTSTVEF AGNVYRGEEA KTKKLAEMNA AKVAFMSIKY GHPNQSPSSP SMTSEKQEAA NSNVKSSEQV SPSQPSKMVT
201: PDVPSKWIEV YEDELPDVLN APAINTAASP VATHPNEDAT LTAAPAATNS TEMMNVAAAD SSAMPTNNVN EPPPRVEESE KKLVMGSGYQ SIPSGQHVVC
301: RPWNPGMTLP EDAEMLFRDD RFIAYRVVKQ
101: AQKENSLLPV YGTSTSGPSH APTFTSTVEF AGNVYRGEEA KTKKLAEMNA AKVAFMSIKY GHPNQSPSSP SMTSEKQEAA NSNVKSSEQV SPSQPSKMVT
201: PDVPSKWIEV YEDELPDVLN APAINTAASP VATHPNEDAT LTAAPAATNS TEMMNVAAAD SSAMPTNNVN EPPPRVEESE KKLVMGSGYQ SIPSGQHVVC
301: RPWNPGMTLP EDAEMLFRDD RFIAYRVVKQ
001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDAANGIKRN IAACSSWMPQ NPTNDGSETS SCVVDESEKK KLIMGTGHLS IPTGQHVVCR
301: PWNPEITLPQ DAEMLFRDDK FIAYRLVKP
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDAANGIKRN IAACSSWMPQ NPTNDGSETS SCVVDESEKK KLIMGTGHLS IPTGQHVVCR
301: PWNPEITLPQ DAEMLFRDDK FIAYRLVKP
Arabidopsis Description
DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.