Factsheet for Bra011953.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	Bra000214.1-P	AT2G41090.1	17360592
AT2G28380.1	Bra000214.1-P	AT2G41100.1	17360592
AT2G28380.1	Bra018296.1-P	AT3G51920.1	17360592
AT2G28380.1	Bra033467.1-P	AT3G51920.1	17360592
AT2G28380.1	Bra039723.1-P	AT4G14640.1	17360592
AT2G28380.1	Bra002368.1-P	AT5G21274.1	17360592
AT2G28380.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	98.37	98.37
CDY15737	Canola	cytosol	93.49	92.84
Bra035704.1-P	Field mustard	nucleus	83.26	82.68
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	29.77	82.58
KRG90046	Soybean	nucleus	16.74	80.0
KRH58007	Soybean	nucleus	15.81	75.56
AT2G28380.1	Thale cress	cytosol	75.58	74.88
KRH25014	Soybean	cytosol, nucleus, plastid	59.53	63.84
KRH29911	Soybean	cytosol, nucleus, plastid	60.47	63.26
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	59.07	61.5
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	58.37	61.07
PGSC0003DMT400020800	Potato	nucleus	57.67	60.64
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	55.35	60.56
Solyc11g069460.1.1	Tomato	nucleus	57.21	59.42
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	55.35	52.77
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	54.19	52.6
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	53.72	49.15
Os10t0480500-01	Rice	cytosol, nucleus, plastid	53.49	44.75
Zm00001d032679_P001	Maize	nucleus	53.02	44.27
TraesCS1A01G157700.3	Wheat	nucleus	53.95	44.11
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	53.26	44.04
TraesCS1B01G174000.1	Wheat	nucleus	53.95	44.02
HORVU1Hr1G041820.1	Barley	nucleus	53.72	43.83
TraesCS1D01G155300.1	Wheat	nucleus	53.95	43.61
KXG38314	Sorghum	mitochondrion, nucleus	52.33	41.67
Bra025523.1-P	Field mustard	nucleus	35.35	41.64
Bra039103.1-P	Field mustard	nucleus	33.95	41.6
Bra032962.1-P	Field mustard	nucleus	34.65	39.95
Bra007702.1-P	Field mustard	nucleus	21.4	27.88
Bra019999.1-P	Field mustard	plastid	17.21	27.01
Bra030793.1-P	Field mustard	cytosol	15.81	24.46

Protein Annotations

EnsemblPlants:Bra011953.1	EnsemblPlants:Bra011953.1-P	EnsemblPlantsGene:Bra011953	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF141
PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI00025419BA
UniProt:M4D645	MapMan:35.1	:	:	:	:

Description

AT2G28380 (E=6e-156) DRB2 | DRB2 (DSRNA-BINDING PROTEIN 2); double-stranded RNA binding

Coordinates

chrA07:-:11013598..11015044

Molecular Weight (calculated)

46971.1 Da

IEP (calculated)

10.254

GRAVY (calculated)

-0.493

Length

430 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCLREGPDHA PRFKATVNFN GEIFESPHYC STLRQAEHSA AEVALGALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDQAKNKKQ AEKNAAMAAW SSLKQLAKEA SSAMPEGENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKRFFMQ SPRPTSPQPC RAATSRILPF ICPQPSSRSR SVSAASVERA IASALENRNY RPQQRFATPG TAAAPPYVPV RHLRSTCHRG MAPPVTMRTS
301: VPVFSAPPPR PPPPSANTQQ QIPSVYVPSM MRAAPVRIAP PVTIRTAAPV FASLPVRKVN IQNPPKSMTK VDETKVQEKE ERTTLVLPDS LETEEEGSAK
401: PVSKSAKETE RGGVKGEQET ARERLENLKI

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.