CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
vacuole 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	KRG89812	AT2G41090.1	17360592
AT2G28380.1	KRG94975	AT2G41090.1	17360592
AT2G28380.1	KRH18664	AT2G41090.1	17360592
AT2G28380.1	KRG89812	AT2G41100.1	17360592
AT2G28380.1	KRG94975	AT2G41100.1	17360592
AT2G28380.1	KRH18664	AT2G41100.1	17360592
AT2G28380.1	KRH31638	AT4G14640.1	17360592
AT2G28380.1	KRH69070	AT4G14640.1	17360592
AT2G28380.1	KRG89812	AT5G21274.1	17360592
AT2G28380.1	KRG94975	AT5G21274.1	17360592
AT2G28380.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58007	Soybean	nucleus	78.89	78.89
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	80.0	46.45
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	83.33	19.08
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	82.22	18.0
KRH25014	Soybean	cytosol, nucleus, plastid	80.0	17.96
KRH29911	Soybean	cytosol, nucleus, plastid	80.0	17.52
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	78.89	17.19
PGSC0003DMT400020800	Potato	nucleus	76.67	16.87
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	80.0	16.74
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	80.0	16.74
Solyc11g069460.1.1	Tomato	nucleus	75.56	16.43
AT2G28380.1	Thale cress	cytosol	78.89	16.36
CDY15737	Canola	cytosol	77.78	16.17
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	77.78	16.17
Bra035704.1-P	Field mustard	nucleus	77.78	16.17
CDY30490	Canola	nucleus	77.78	16.13
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	74.44	15.12
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	75.56	15.08
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	73.33	14.04
Zm00001d032679_P001	Maize	nucleus	73.33	12.82
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	72.22	12.5
Os10t0480500-01	Rice	cytosol, nucleus, plastid	71.11	12.45
KRH63090	Soybean	nucleus	21.11	12.18
TraesCS1A01G157700.3	Wheat	nucleus	70.0	11.98
HORVU1Hr1G041820.1	Barley	nucleus	70.0	11.95
TraesCS1B01G174000.1	Wheat	nucleus	70.0	11.95
KXG38314	Sorghum	mitochondrion, nucleus	71.11	11.85
TraesCS1D01G155300.1	Wheat	nucleus	70.0	11.84
KRH68665	Soybean	nucleus	67.78	11.32
KRG96921	Soybean	nucleus	66.67	11.15
KRH62980	Soybean	nucleus	24.44	11.06
KRH46125	Soybean	mitochondrion, nucleus	35.56	9.09
KRG98822	Soybean	nucleus	23.33	7.75
KRH62246	Soybean	nucleus	28.89	7.24
KRH01275	Soybean	nucleus	26.67	7.19
KRH52961	Soybean	nucleus	28.89	7.16
KRH57881	Soybean	nucleus	38.89	6.94
KRH15123	Soybean	nucleus	31.11	6.1
KRH30959	Soybean	mitochondrion	14.44	4.71
KRH73012	Soybean	nucleus	7.78	2.4

Protein Annotations

EMBL:ACUP02012534	EnsemblPlants:KRG90046	EnsemblPlantsGene:GLYMA_20G063900	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF141
PFAM:PF00035	PFscan:PS50137	ProteinID:KRG90046	ProteinID:KRG90046.1	SMART:SM00358	SUPFAM:SSF54768
UniParc:UPI0002969F6B	UniProt:K7N1V3	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:21339378..21339650

Molecular Weight (calculated)

10260.3 Da

IEP (calculated)

9.617

GRAVY (calculated)

-0.369

Length

90 amino acids

Sequence
(BLAST)

1: MYKNQLQELA QRSCFNLPSY TSLQEGPDHA PRFKAIVNFN GKIFKTPHYC STLRQAEHSA AEVTLNSLTH RGPSHSLAAK ILMSLCRFYF

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.