CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01275	Soybean	nucleus	88.41	73.05
KRH63090	Soybean	nucleus	19.57	34.62
KRH62980	Soybean	nucleus	23.55	32.66
PGSC0003DMT400088113	Potato	nucleus	19.93	31.98
VIT_14s0006g01440.t01	Wine grape	nucleus	38.41	31.83
KRH73012	Soybean	nucleus	27.17	25.68
PGSC0003DMT400085647	Potato	cytosol, nucleus	23.55	24.53
GSMUA_Achr2P22850_001	Banana	cytosol	27.17	24.27
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	16.3	22.73
PGSC0003DMT400014406	Potato	nucleus	17.39	22.22
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	12.32	21.94
KRH15123	Soybean	nucleus	34.42	20.7
TraesCS6A01G172500.1	Wheat	cytosol	20.29	19.72
TraesCS6D01G161700.2	Wheat	nucleus	20.65	18.87
TraesCS6B01G200200.1	Wheat	nucleus	20.65	18.81
EES14943	Sorghum	nucleus	18.84	17.45
Os08t0384100-01	Rice	cytosol	19.2	16.99
KRG90046	Soybean	nucleus	4.71	14.44
Zm00001d032326_P002	Maize	cytosol, plastid	18.84	14.36
KRH62246	Soybean	nucleus	18.12	13.93
KRH52961	Soybean	nucleus	18.12	13.77
KRH58007	Soybean	nucleus	4.35	13.33
KRG98822	Soybean	nucleus	10.87	11.07
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	14.86	10.43
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	15.22	10.22
KRH25014	Soybean	cytosol, nucleus, plastid	14.49	9.98
KRH46125	Soybean	mitochondrion, nucleus	12.68	9.94
KRH29911	Soybean	cytosol, nucleus, plastid	14.13	9.49
KRH57881	Soybean	nucleus	16.3	8.93
KRG96921	Soybean	nucleus	16.67	8.55
KRH68665	Soybean	nucleus	15.94	8.16
TraesCS5A01G149300.1	Wheat	cytosol, plastid	10.14	8.14
TraesCS5B01G148000.1	Wheat	plastid	10.14	8.14
Zm00001d052326_P001	Maize	cytosol	10.51	8.03
EES09107	Sorghum	cytosol	9.78	7.48

Protein Annotations

EntrezGene:102662749	Gene3D:3.30.160.20	MapMan:35.2	EMBL:ACUP02007109	EnsemblPlantsGene:GLYMA_11G217600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003725	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0030422	GO:GO:0031053	GO:GO:0031054	GO:GO:0040029	GO:GO:0090502
InterPro:IPR014720	UniProt:K7LRI7	EnsemblPlants:KRH30959	ProteinID:KRH30959	ProteinID:KRH30959.1	PFAM:PF00035
PFscan:PS50137	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI0002963709	InterPro:dsRBD_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr11:+:31217638..31221501

Molecular Weight (calculated)

29543.3 Da

IEP (calculated)

9.302

GRAVY (calculated)

-0.256

Length

276 amino acids

Sequence
(BLAST)

001: MLTRGANMIQ NLGQQYGMKY TSPNTFSHLR AAEADVARMA LENLHVKFKT EERPVTHENT TLSKSILHEY AAKLKVEKPA YNTVQLEGLL PLFVSSMTFQ
101: GTTYVGDAAR SKKEAEQLAA RNAITSILDG ATSGLLYETI KSKYSTFGAV RSTKSECINA SSAVVEHVPS LVAVPVAANG NETKVALIVP SFNQECQMRE
201: HVSSVQAITI TEVPNLNLLP GPEQSTAGVS CELSIGIGSG ALSIGDGSRE LSVGDGSGSK KRKRNKSKAN KKLGLE

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.